Analysis of interatomic Contacts of Structural Units in PDB entry:
6C13

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C13 entry

There are 2 chains in PDB entry 6C13 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 821	PRO 1362
B	SER 821	PRO 1362

There are 18 helices in PDB entry 6C13. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	886	890	Right-handed 310
Helix 2	AA2	A	963	967	Right-handed 310
Helix 3	AA3	A	977	982	Right-handed alpha
Helix 4	AA4	A	1116	1122	Right-handed alpha
Helix 5	AA5	A	1193	1197	Right-handed 310
Helix 6	AA6	A	1262	1267	Right-handed alpha
Helix 7	AA7	A	1268	1284	Right-handed alpha
Helix 8	AA8	A	1327	1338	Right-handed alpha
Helix 9	AA9	A	1338	1346	Right-handed alpha
Helix 10	AB1	B	886	890	Right-handed 310
Helix 11	AB2	B	963	967	Right-handed 310
Helix 12	AB3	B	977	982	Right-handed alpha
Helix 13	AB4	B	1116	1122	Right-handed alpha
Helix 14	AB5	B	1193	1197	Right-handed 310
Helix 15	AB6	B	1262	1267	Right-handed alpha
Helix 16	AB7	B	1268	1284	Right-handed alpha
Helix 17	AB8	B	1327	1338	Right-handed alpha
Helix 18	AB9	B	1338	1346	Right-handed alpha

There are 28 sheets in PDB entry 6C13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	822	824	first strand
Strand 2	A	848	850	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	828	833	first strand
Strand 2	A	914	921	parallel
Strand 3	A	897	904	anti-parallel
Strand 4	A	858	861	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	870	872	first strand
Strand 2	A	879	881	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	935	938	first strand
Strand 2	A	1026	1029	parallel
Strand 3	A	1007	1009	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	969	972	first strand
Strand 2	A	1011	1014	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	984	986	first strand
Strand 2	A	993	995	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1039	1040	first strand
Strand 2	A	1065	1066	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1044	1045	first strand
Strand 2	A	1132	1135	parallel
Strand 3	A	1110	1115	anti-parallel
Strand 4	A	1073	1078	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1059	1062	first strand
Strand 2	A	1093	1096	anti-parallel
Strand 3	A	1085	1087	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1147	1149	first strand
Strand 2	A	1173	1175	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1153	1159	first strand
Strand 2	A	1239	1248	parallel
Strand 3	A	1222	1230	anti-parallel
Strand 4	A	1185	1189	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1167	1170	first strand
Strand 2	A	1208	1210	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1288	1296	first strand
Strand 2	A	1311	1319	anti-parallel
Strand 3	A	1324	1325	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1288	1296	first strand
Strand 2	A	1311	1319	anti-parallel
Strand 3	A	1254	1258	anti-parallel
Strand 4	A	1356	1360	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	822	824	first strand
Strand 2	B	848	850	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	828	833	first strand
Strand 2	B	914	921	parallel
Strand 3	B	897	904	anti-parallel
Strand 4	B	858	861	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	870	872	first strand
Strand 2	B	879	881	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	935	938	first strand
Strand 2	B	1026	1029	parallel
Strand 3	B	1007	1009	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	969	972	first strand
Strand 2	B	1011	1014	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	984	986	first strand
Strand 2	B	993	995	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1039	1040	first strand
Strand 2	B	1065	1066	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1044	1045	first strand
Strand 2	B	1132	1135	parallel
Strand 3	B	1110	1115	anti-parallel
Strand 4	B	1073	1078	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1059	1062	first strand
Strand 2	B	1093	1096	anti-parallel
Strand 3	B	1085	1087	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1147	1149	first strand
Strand 2	B	1173	1175	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1153	1159	first strand
Strand 2	B	1239	1248	parallel
Strand 3	B	1222	1230	anti-parallel
Strand 4	B	1185	1189	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1167	1170	first strand
Strand 2	B	1208	1210	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1288	1296	first strand
Strand 2	B	1311	1319	anti-parallel
Strand 3	B	1324	1325	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1288	1296	first strand
Strand 2	B	1311	1319	anti-parallel
Strand 3	B	1254	1258	anti-parallel
Strand 4	B	1356	1360	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C13

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C13