Analysis of interatomic Contacts of Structural Units in PDB entry:
6C1A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C1A entry

There are 10 chains in PDB entry 6C1A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 147MET 214
B
 LYS 148PRO 215
C
 C 1 C 12
D
 G 1 A 5
D
 A 7 G 12
E
 LYS 148PRO 215
F
 LYS 148PRO 215
G
 C 1 C 12
H
 G 1 A 5
H
 A 7 G 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6C1A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
189 198Right-handed alpha
Helix 2
AA2
A
199 201Right-handed 310
Helix 3
AA3
B
189 198Right-handed alpha
Helix 4
AA4
B
199 201Right-handed 310
Helix 5
AA5
E
189 198Right-handed alpha
Helix 6
AA6
E
199 201Right-handed 310
Helix 7
AA7
F
189 198Right-handed alpha
Helix 8
AA8
F
199 201Right-handed 310
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There are 8 sheets in PDB entry 6C1A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
160 165anti-parallel
Strand 3
A
175 180anti-parallel
Strand 4
A
186 187anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
212 213anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
160 165anti-parallel
Strand 3
B
175 180anti-parallel
Strand 4
B
186 187anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 207first strand
Strand 2
B
212 213anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
150 151first strand
Strand 2
E
160 165anti-parallel
Strand 3
E
175 180anti-parallel
Strand 4
E
186 187anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
206 207first strand
Strand 2
E
212 213anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
150 151first strand
Strand 2
F
160 165anti-parallel
Strand 3
F
175 180anti-parallel
Strand 4
F
186 187anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
206 207first strand
Strand 2
F
212 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il