Analysis of interatomic Contacts of Structural Units in PDB entry:
6C1W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C1W entry

There are 3 chains in PDB entry 6C1W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 432
B	MET 1	PHE 432
C	MET 1	PHE 432

There are 56 helices in PDB entry 6C1W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	49	Right-handed alpha
Helix 2	AA2	A	55	60	Right-handed alpha
Helix 3	AA3	A	78	94	Right-handed alpha
Helix 4	AA4	A	112	121	Right-handed alpha
Helix 5	AA5	A	121	128	Right-handed alpha
Helix 6	AA6	A	137	139	Right-handed 310
Helix 7	AA7	A	157	161	Right-handed alpha
Helix 8	AA8	A	181	186	Right-handed 310
Helix 9	AA9	A	192	200	Right-handed alpha
Helix 10	AB1	A	201	206	Right-handed alpha
Helix 11	AB2	A	218	231	Right-handed alpha
Helix 12	AB3	A	256	270	Right-handed alpha
Helix 13	AB4	A	292	306	Right-handed alpha
Helix 14	AB5	A	325	334	Right-handed alpha
Helix 15	AB6	A	337	348	Right-handed alpha
Helix 16	AB7	A	349	353	Right-handed 310
Helix 17	AB8	A	356	370	Right-handed alpha
Helix 18	AB9	A	380	387	Right-handed alpha
Helix 19	AC1	A	394	407	Right-handed alpha
Helix 20	AC2	B	38	49	Right-handed alpha
Helix 21	AC3	B	55	60	Right-handed alpha
Helix 22	AC4	B	78	92	Right-handed alpha
Helix 23	AC5	B	112	121	Right-handed alpha
Helix 24	AC6	B	121	128	Right-handed alpha
Helix 25	AC7	B	137	139	Right-handed 310
Helix 26	AC8	B	157	161	Right-handed alpha
Helix 27	AC9	B	181	186	Right-handed 310
Helix 28	AD1	B	192	200	Right-handed alpha
Helix 29	AD2	B	201	206	Right-handed alpha
Helix 30	AD3	B	218	231	Right-handed alpha
Helix 31	AD4	B	256	270	Right-handed alpha
Helix 32	AD5	B	292	306	Right-handed alpha
Helix 33	AD6	B	325	334	Right-handed alpha
Helix 34	AD7	B	337	348	Right-handed alpha
Helix 35	AD8	B	349	353	Right-handed 310
Helix 36	AD9	B	356	370	Right-handed alpha
Helix 37	AE1	B	380	387	Right-handed alpha
Helix 38	AE2	B	394	407	Right-handed alpha
Helix 39	AE3	C	38	49	Right-handed alpha
Helix 40	AE4	C	55	60	Right-handed alpha
Helix 41	AE5	C	78	92	Right-handed alpha
Helix 42	AE6	C	112	128	Right-handed alpha
Helix 43	AE7	C	137	139	Right-handed 310
Helix 44	AE8	C	157	161	Right-handed alpha
Helix 45	AE9	C	181	186	Right-handed 310
Helix 46	AF1	C	192	200	Right-handed alpha
Helix 47	AF2	C	201	206	Right-handed alpha
Helix 48	AF3	C	218	231	Right-handed alpha
Helix 49	AF4	C	256	270	Right-handed alpha
Helix 50	AF5	C	292	306	Right-handed alpha
Helix 51	AF6	C	325	334	Right-handed alpha
Helix 52	AF7	C	337	347	Right-handed alpha
Helix 53	AF8	C	349	353	Right-handed 310
Helix 54	AF9	C	356	370	Right-handed alpha
Helix 55	AG1	C	380	387	Right-handed alpha
Helix 56	AG2	C	394	407	Right-handed alpha

There are 18 sheets in PDB entry 6C1W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	8	first strand
Strand 2	A	11	17	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	412	414	parallel
Strand 3	A	277	283	parallel
Strand 4	A	307	316	parallel
Strand 5	A	371	375	parallel
Strand 6	A	390	392	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	98	104	parallel
Strand 3	A	65	71	parallel
Strand 4	A	164	170	parallel
Strand 5	A	233	241	parallel
Strand 6	A	247	253	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	146	first strand
Strand 2	A	152	156	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	174	first strand
Strand 2	A	178	179	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	422	424	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	8	first strand
Strand 2	B	11	17	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	25	first strand
Strand 2	B	412	414	parallel
Strand 3	B	277	283	parallel
Strand 4	B	307	316	parallel
Strand 5	B	371	375	parallel
Strand 6	B	390	392	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	132	first strand
Strand 2	B	98	104	parallel
Strand 3	B	65	71	parallel
Strand 4	B	164	170	parallel
Strand 5	B	233	241	parallel
Strand 6	B	247	253	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	146	first strand
Strand 2	B	152	156	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	178	179	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	273	first strand
Strand 2	B	422	424	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	8	first strand
Strand 2	C	11	17	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	25	first strand
Strand 2	C	412	415	parallel
Strand 3	C	277	283	parallel
Strand 4	C	307	316	parallel
Strand 5	C	371	375	parallel
Strand 6	C	390	392	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	132	first strand
Strand 2	C	98	104	parallel
Strand 3	C	65	71	parallel
Strand 4	C	164	170	parallel
Strand 5	C	233	241	parallel
Strand 6	C	247	253	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	146	first strand
Strand 2	C	152	156	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	174	first strand
Strand 2	C	178	179	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	422	424	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C1W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C1W