Analysis of interatomic Contacts of Structural Units in PDB entry:
6C24

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C24 entry

There are 13 chains in PDB entry 6C24 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 426	ASP 548
B	ALA 113	ARG 115
B	PHE 117	GLN 119
E	PRO 140	SER 166
K	GLU 259	LYS 735
L	TYR 80	ARG 441
M	HIS 561	ARG 682
N	LYS 4	ASN 410
O	ALA 23	ALA 29
P	GLU 232	ARG 295
Q	ALA 81	GLY 146
Z	UNK 15	UNK 259
C	CYS 14	LEU 247

There are 33 helices in PDB entry 6C24. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	459	470	Right-handed alpha
Helix 2	AA2	A	543	548	Right-handed alpha
Helix 3	AA3	E	143	145	Right-handed 310
Helix 4	AA4	E	146	151	Right-handed alpha
Helix 5	AA5	K	274	277	Right-handed 310
Helix 6	AA6	K	278	284	Right-handed alpha
Helix 7	AA7	K	435	448	Right-handed alpha
Helix 8	AA8	K	452	458	Right-handed alpha
Helix 9	AA9	K	462	476	Right-handed alpha
Helix 10	AB1	K	534	539	Right-handed alpha
Helix 11	AB2	K	571	575	Right-handed 310
Helix 12	AB3	K	604	609	Right-handed alpha
Helix 13	AB4	K	647	662	Right-handed alpha
Helix 14	AB5	K	682	687	Right-handed 310
Helix 15	AB6	L	267	279	Right-handed alpha
Helix 16	AB7	M	575	579	Right-handed 310
Helix 17	AB8	M	591	601	Right-handed alpha
Helix 18	AB9	M	607	625	Right-handed alpha
Helix 19	AC1	M	629	651	Right-handed alpha
Helix 20	AC2	M	652	665	Right-handed alpha
Helix 21	AC3	M	670	682	Right-handed alpha
Helix 22	AC4	N	5	27	Right-handed alpha
Helix 23	AC5	N	27	31	Right-handed alpha
Helix 24	AC6	N	355	362	Right-handed alpha
Helix 25	AC7	P	244	257	Right-handed alpha
Helix 26	AC8	P	277	281	Right-handed 310
Helix 27	AC9	Q	82	105	Right-handed alpha
Helix 28	AD1	Z	147	151	Right-handed 310
Helix 29	AD2	C	15	63	Right-handed alpha
Helix 30	AD3	C	167	180	Right-handed alpha
Helix 31	AD4	C	219	223	Right-handed 310
Helix 32	AD5	C	224	229	Right-handed alpha
Helix 33	AD6	C	236	247	Right-handed alpha

There are 25 sheets in PDB entry 6C24. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	433	first strand
Strand 2	A	488	491	parallel
Strand 3	A	474	477	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	530	first strand
Strand 2	N	32	39	anti-parallel
Strand 3	N	398	404	anti-parallel
Strand 4	N	389	394	anti-parallel
Strand 5	N	377	382	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	614	618	first strand
Strand 2	K	624	628	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	637	640	first strand
Strand 2	K	705	712	anti-parallel
Strand 3	K	695	702	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	645	646	first strand
Strand 2	K	674	676	anti-parallel
Strand 3	K	666	668	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	680	681	first strand
Strand 2	C	114	115	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	688	689	first strand
Strand 2	K	723	724	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	99	101	first strand
Strand 2	L	113	116	anti-parallel
Strand 3	L	120	122	anti-parallel
Strand 4	L	138	139	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	125	127	first strand
Strand 2	L	130	133	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	154	first strand
Strand 2	L	161	167	anti-parallel
Strand 3	L	171	176	anti-parallel
Strand 4	L	181	186	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	195	197	first strand
Strand 2	L	207	209	anti-parallel
Strand 3	L	215	219	anti-parallel
Strand 4	L	224	227	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	239	244	first strand
Strand 2	L	251	255	anti-parallel
Strand 3	L	260	263	anti-parallel
Strand 4	L	300	301	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	309	315	first strand
Strand 2	L	318	323	anti-parallel
Strand 3	L	327	333	anti-parallel
Strand 4	L	350	357	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	368	370	first strand
Strand 2	L	376	379	anti-parallel
Strand 3	L	387	390	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	413	417	first strand
Strand 2	L	424	429	anti-parallel
Strand 3	L	437	438	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	565	566	first strand
Strand 2	M	573	574	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	50	54	first strand
Strand 2	N	61	65	anti-parallel
Strand 3	N	77	87	anti-parallel
Strand 4	N	116	123	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	141	142	first strand
Strand 2	N	150	151	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	183	185	first strand
Strand 2	N	193	195	anti-parallel
Strand 3	N	202	205	anti-parallel
Strand 4	N	221	223	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	230	235	first strand
Strand 2	N	242	247	anti-parallel
Strand 3	N	251	256	anti-parallel
Strand 4	N	267	270	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	288	289	first strand
Strand 2	N	301	302	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	298	299	first strand
Strand 2	N	312	313	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	320	325	first strand
Strand 2	N	333	337	anti-parallel
Strand 3	N	342	344	anti-parallel
Strand 4	N	368	370	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	35	36	first strand
Strand 2	Z	62	63	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	59	60	first strand
Strand 2	Z	85	86	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C24

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C24