Analysis of interatomic Contacts of Structural Units in PDB entry:
6C29

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C29 entry

There are 3 chains in PDB entry 6C29 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	GLY 247
B	SER 1	GLY 247
C	SER 1	THR 151

There are 5 helices in PDB entry 6C29. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	78	82	Right-handed 310
Helix 2	AA2	A	136	146	Right-handed alpha
Helix 3	AA3	B	78	82	Right-handed 310
Helix 4	AA4	B	136	146	Right-handed alpha
Helix 5	AA5	C	136	146	Right-handed alpha

There are 18 sheets in PDB entry 6C29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	A	13	24	anti-parallel
Strand 3	A	30	38	anti-parallel
Strand 4	A	90	97	anti-parallel
Strand 5	A	68	69	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	84	88	anti-parallel
Strand 3	A	75	77	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	104	114	anti-parallel
Strand 3	A	118	128	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	163	first strand
Strand 2	A	166	173	anti-parallel
Strand 3	A	204	213	anti-parallel
Strand 4	A	191	193	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	163	first strand
Strand 2	A	166	173	anti-parallel
Strand 3	A	204	213	anti-parallel
Strand 4	A	197	201	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	186	first strand
Strand 2	A	226	233	anti-parallel
Strand 3	A	236	243	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	13	24	anti-parallel
Strand 3	B	29	38	anti-parallel
Strand 4	B	90	98	anti-parallel
Strand 5	B	65	69	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	50	first strand
Strand 2	B	84	88	anti-parallel
Strand 3	B	75	77	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	104	114	anti-parallel
Strand 3	B	118	128	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	163	first strand
Strand 2	B	166	173	anti-parallel
Strand 3	B	204	212	anti-parallel
Strand 4	B	192	193	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	163	first strand
Strand 2	B	166	173	anti-parallel
Strand 3	B	204	212	anti-parallel
Strand 4	B	197	201	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	186	first strand
Strand 2	B	226	233	anti-parallel
Strand 3	B	236	243	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	10	first strand
Strand 2	C	13	24	anti-parallel
Strand 3	C	30	38	anti-parallel
Strand 4	C	90	97	anti-parallel
Strand 5	C	67	69	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	60	first strand
Strand 2	C	104	114	anti-parallel
Strand 3	C	43	45	anti-parallel
Strand 4	C	82	88	anti-parallel
Strand 5	C	75	79	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	60	first strand
Strand 2	C	104	114	anti-parallel
Strand 3	C	118	128	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	163	first strand
Strand 2	C	166	173	anti-parallel
Strand 3	C	204	213	anti-parallel
Strand 4	C	191	193	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	163	first strand
Strand 2	C	166	173	anti-parallel
Strand 3	C	204	213	anti-parallel
Strand 4	C	197	201	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	186	first strand
Strand 2	C	226	233	anti-parallel
Strand 3	C	236	243	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C29

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C29