Analysis of interatomic Contacts of Structural Units in PDB entry:
6C2C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C2C entry

There are 2 chains in PDB entry 6C2C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -4ALA 294
B
 GLY -4ALA 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6C2C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 40Right-handed alpha
Helix 2
AA2
A
43 54Right-handed alpha
Helix 3
AA3
A
92 100Right-handed alpha
Helix 4
AA4
A
103 107Right-handed 310
Helix 5
AA5
A
116 121Right-handed alpha
Helix 6
AA6
A
139 147Right-handed alpha
Helix 7
AA7
A
148 155Right-handed alpha
Helix 8
AA8
A
156 176Right-handed alpha
Helix 9
AA9
A
225 230Right-handed alpha
Helix 10
AB1
A
242 261Right-handed alpha
Helix 11
AB2
B
35 40Right-handed alpha
Helix 12
AB3
B
43 54Right-handed alpha
Helix 13
AB4
B
92 100Right-handed alpha
Helix 14
AB5
B
103 107Right-handed 310
Helix 15
AB6
B
116 121Right-handed alpha
Helix 16
AB7
B
139 147Right-handed alpha
Helix 17
AB8
B
148 155Right-handed alpha
Helix 18
AB9
B
156 176Right-handed alpha
Helix 19
AC1
B
225 230Right-handed alpha
Helix 20
AC2
B
242 261Right-handed alpha
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There are 6 sheets in PDB entry 6C2C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 19first strand
Strand 2
A
22 34anti-parallel
Strand 3
A
60 70anti-parallel
Strand 4
A
75 78anti-parallel
Strand 5
A
109 111parallel
Strand 6
A
135 137parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
128 129anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
205 211anti-parallel
Strand 4
A
214 218anti-parallel
Strand 5
A
263 265parallel
Strand 6
A
274 280anti-parallel
Strand 7
A
283 288anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 19first strand
Strand 2
B
22 34anti-parallel
Strand 3
B
60 70anti-parallel
Strand 4
B
75 78anti-parallel
Strand 5
B
109 111parallel
Strand 6
B
135 137parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
128 129anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 189first strand
Strand 2
B
192 196anti-parallel
Strand 3
B
205 211anti-parallel
Strand 4
B
214 218anti-parallel
Strand 5
B
263 265parallel
Strand 6
B
274 280anti-parallel
Strand 7
B
283 288anti-parallel
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