Analysis of interatomic Contacts of Structural Units in PDB entry:
6C2F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C2F entry

There are 24 chains in PDB entry 6C2F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 147	PRO 215
B	G 1	C 5
B	G 7	C 12
C	G 1	C 12
D	LYS 148	PRO 215
E	G 1	C 5
E	G 7	C 12
F	G 1	C 12
G	LYS 148	PRO 215
H	G 1	C 5
H	G 7	C 12
I	G 1	C 12
J	LYS 148	MET 214
K	G 1	C 5
K	G 7	C 12
L	G 1	C 12
M	LYS 148	PRO 215
N	G 1	C 5
N	G 7	C 12
O	G 1	C 12
P	LYS 148	PRO 215
Q	G 1	C 5
Q	G 7	C 12
R	G 1	C 12

There are 12 helices in PDB entry 6C2F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	189	198	Right-handed alpha
Helix 2	AA2	A	199	201	Right-handed 310
Helix 3	AA3	D	189	198	Right-handed alpha
Helix 4	AA4	D	199	201	Right-handed 310
Helix 5	AA5	G	189	198	Right-handed alpha
Helix 6	AA6	G	199	201	Right-handed 310
Helix 7	AA7	J	189	198	Right-handed alpha
Helix 8	AA8	J	199	201	Right-handed 310
Helix 9	AA9	M	189	198	Right-handed alpha
Helix 10	AB1	M	199	201	Right-handed 310
Helix 11	AB2	P	189	198	Right-handed alpha
Helix 12	AB3	P	199	201	Right-handed 310

There are 12 sheets in PDB entry 6C2F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	151	first strand
Strand 2	A	160	165	anti-parallel
Strand 3	A	175	180	anti-parallel
Strand 4	A	186	187	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	207	first strand
Strand 2	A	212	213	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	151	first strand
Strand 2	D	160	165	anti-parallel
Strand 3	D	175	180	anti-parallel
Strand 4	D	186	187	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	207	first strand
Strand 2	D	212	213	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	150	151	first strand
Strand 2	G	160	165	anti-parallel
Strand 3	G	175	180	anti-parallel
Strand 4	G	186	187	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	206	207	first strand
Strand 2	G	212	213	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	150	151	first strand
Strand 2	J	160	165	anti-parallel
Strand 3	J	175	180	anti-parallel
Strand 4	J	186	187	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	206	207	first strand
Strand 2	J	212	213	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	150	151	first strand
Strand 2	M	160	165	anti-parallel
Strand 3	M	175	180	anti-parallel
Strand 4	M	186	187	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	206	207	first strand
Strand 2	M	212	213	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	150	151	first strand
Strand 2	P	160	165	anti-parallel
Strand 3	P	175	180	anti-parallel
Strand 4	P	186	187	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	206	207	first strand
Strand 2	P	212	213	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C2F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C2F