Analysis of interatomic Contacts of Structural Units in PDB entry:
6C2M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C2M entry

There are 4 chains in PDB entry 6C2M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 989	MET 1179
B	LYS 989	MET 1179
C	LYS 989	MET 1179
D	LYS 989	MET 1179

There are 16 helices in PDB entry 6C2M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1012	1023	Right-handed alpha
Helix 2	AA2	A	1056	1060	Right-handed alpha
Helix 3	AA3	A	1132	1136	Right-handed alpha
Helix 4	AA4	A	1172	1179	Right-handed alpha
Helix 5	AA5	B	1012	1023	Right-handed alpha
Helix 6	AA6	B	1056	1060	Right-handed alpha
Helix 7	AA7	B	1132	1136	Right-handed alpha
Helix 8	AA8	B	1172	1179	Right-handed alpha
Helix 9	AA9	C	1012	1023	Right-handed alpha
Helix 10	AB1	C	1056	1060	Right-handed alpha
Helix 11	AB2	C	1132	1136	Right-handed alpha
Helix 12	AB3	C	1173	1178	Right-handed alpha
Helix 13	AB4	D	1012	1021	Right-handed alpha
Helix 14	AB5	D	1056	1060	Right-handed alpha
Helix 15	AB6	D	1132	1136	Right-handed alpha
Helix 16	AB7	D	1172	1179	Right-handed alpha

There are 10 sheets in PDB entry 6C2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1006	1009	first strand
Strand 2	A	993	999	anti-parallel
Strand 3	A	1033	1037	anti-parallel
Strand 4	A	1042	1048	anti-parallel
Strand 5	A	1051	1055	anti-parallel
Strand 6	A	1082	1086	anti-parallel
Strand 7	A	1075	1077	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1103	1107	first strand
Strand 2	A	1113	1118	anti-parallel
Strand 3	A	1123	1131	anti-parallel
Strand 4	A	1163	1171	anti-parallel
Strand 5	A	1150	1160	anti-parallel
Strand 6	A	1142	1144	anti-parallel
Strand 7	A	1103	1107	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1006	1009	first strand
Strand 2	B	993	999	anti-parallel
Strand 3	B	1033	1037	anti-parallel
Strand 4	B	1042	1048	anti-parallel
Strand 5	B	1051	1055	anti-parallel
Strand 6	B	1082	1086	anti-parallel
Strand 7	B	1075	1077	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1103	1107	first strand
Strand 2	B	1113	1118	anti-parallel
Strand 3	B	1123	1131	anti-parallel
Strand 4	B	1163	1171	anti-parallel
Strand 5	B	1150	1160	anti-parallel
Strand 6	B	1142	1144	anti-parallel
Strand 7	B	1103	1107	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1006	1009	first strand
Strand 2	C	993	999	anti-parallel
Strand 3	C	1033	1037	anti-parallel
Strand 4	C	1042	1048	anti-parallel
Strand 5	C	1051	1055	anti-parallel
Strand 6	C	1082	1086	anti-parallel
Strand 7	C	1075	1077	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1064	1066	first strand
Strand 2	C	1069	1071	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1103	1107	first strand
Strand 2	C	1113	1118	anti-parallel
Strand 3	C	1123	1131	anti-parallel
Strand 4	C	1163	1171	anti-parallel
Strand 5	C	1150	1160	anti-parallel
Strand 6	C	1142	1144	anti-parallel
Strand 7	C	1103	1107	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1006	1009	first strand
Strand 2	D	993	999	anti-parallel
Strand 3	D	1033	1037	anti-parallel
Strand 4	D	1042	1048	anti-parallel
Strand 5	D	1051	1055	anti-parallel
Strand 6	D	1082	1086	anti-parallel
Strand 7	D	1075	1077	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1064	1066	first strand
Strand 2	D	1069	1071	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1103	1107	first strand
Strand 2	D	1113	1118	anti-parallel
Strand 3	D	1123	1131	anti-parallel
Strand 4	D	1163	1171	anti-parallel
Strand 5	D	1150	1160	anti-parallel
Strand 6	D	1142	1144	anti-parallel
Strand 7	D	1103	1107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C2M

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C2M