Analysis of interatomic Contacts of Structural Units in PDB entry:
6C46

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C46 entry

There are 5 chains in PDB entry 6C46 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -1	TYR 181
B	HIS -1	TYR 181
C	HIS -1	TYR 181
D	HIS -1	TYR 181
E	HIS -1	TYR 181

There are 29 helices in PDB entry 6C46. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	40	Right-handed alpha
Helix 2	AA2	A	66	69	Right-handed 310
Helix 3	AA3	A	139	141	Right-handed 310
Helix 4	AA4	A	160	164	Right-handed 310
Helix 5	AA5	A	167	172	Right-handed alpha
Helix 6	AA6	A	175	179	Right-handed 310
Helix 7	AA7	B	32	40	Right-handed alpha
Helix 8	AA8	B	66	69	Right-handed 310
Helix 9	AA9	B	139	141	Right-handed 310
Helix 10	AB1	B	160	164	Right-handed 310
Helix 11	AB2	B	167	172	Right-handed alpha
Helix 12	AB3	B	175	179	Right-handed 310
Helix 13	AB4	C	32	40	Right-handed alpha
Helix 14	AB5	C	66	69	Right-handed 310
Helix 15	AB6	C	160	164	Right-handed 310
Helix 16	AB7	C	167	172	Right-handed alpha
Helix 17	AB8	C	175	179	Right-handed 310
Helix 18	AB9	D	32	40	Right-handed alpha
Helix 19	AC1	D	66	69	Right-handed 310
Helix 20	AC2	D	139	141	Right-handed 310
Helix 21	AC3	D	160	164	Right-handed 310
Helix 22	AC4	D	167	172	Right-handed alpha
Helix 23	AC5	D	175	179	Right-handed 310
Helix 24	AC6	E	31	40	Right-handed alpha
Helix 25	AC7	E	66	69	Right-handed 310
Helix 26	AC8	E	139	141	Right-handed 310
Helix 27	AC9	E	160	164	Right-handed 310
Helix 28	AD1	E	167	172	Right-handed alpha
Helix 29	AD2	E	175	179	Right-handed 310

There are 11 sheets in PDB entry 6C46. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	12	15	anti-parallel
Strand 3	A	110	113	anti-parallel
Strand 4	A	72	78	anti-parallel
Strand 5	A	127	134	anti-parallel
Strand 6	A	47	54	anti-parallel
Strand 7	B	25	31	anti-parallel
Strand 8	B	19	20	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	24	31	anti-parallel
Strand 3	B	47	54	anti-parallel
Strand 4	B	127	134	anti-parallel
Strand 5	B	72	78	anti-parallel
Strand 6	B	110	113	anti-parallel
Strand 7	B	12	15	anti-parallel
Strand 8	B	2	5	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	104	first strand
Strand 2	A	80	87	anti-parallel
Strand 3	A	117	123	anti-parallel
Strand 4	A	58	64	anti-parallel
Strand 5	A	143	145	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	104	first strand
Strand 2	B	80	87	anti-parallel
Strand 3	B	117	123	anti-parallel
Strand 4	B	58	64	anti-parallel
Strand 5	B	143	145	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	12	15	anti-parallel
Strand 3	C	110	113	anti-parallel
Strand 4	C	72	78	anti-parallel
Strand 5	C	127	134	anti-parallel
Strand 6	C	47	54	anti-parallel
Strand 7	D	24	31	anti-parallel
Strand 8	D	19	21	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	C	25	31	anti-parallel
Strand 3	D	47	54	anti-parallel
Strand 4	D	127	134	anti-parallel
Strand 5	D	72	78	anti-parallel
Strand 6	D	110	113	anti-parallel
Strand 7	D	12	15	anti-parallel
Strand 8	D	2	5	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	104	first strand
Strand 2	C	80	87	anti-parallel
Strand 3	C	117	123	anti-parallel
Strand 4	C	58	64	anti-parallel
Strand 5	C	143	145	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	104	first strand
Strand 2	D	80	87	anti-parallel
Strand 3	D	117	123	anti-parallel
Strand 4	D	58	64	anti-parallel
Strand 5	D	143	145	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	5	first strand
Strand 2	E	12	15	anti-parallel
Strand 3	E	110	113	anti-parallel
Strand 4	E	72	78	anti-parallel
Strand 5	E	127	134	anti-parallel
Strand 6	E	47	54	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	21	first strand
Strand 2	E	24	26	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	104	first strand
Strand 2	E	80	87	anti-parallel
Strand 3	E	117	123	anti-parallel
Strand 4	E	58	64	anti-parallel
Strand 5	E	143	145	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C46

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C46