Analysis of interatomic Contacts of Structural Units in PDB entry:
6C4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C4D entry

There are 4 chains in PDB entry 6C4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 8GLU 294
B
 LEU 7GLU 294
C
 ILE 10GLU 294
D
 MET 5LEU 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6C4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 69Right-handed alpha
Helix 2
AA2
A
100 105Right-handed alpha
Helix 3
AA3
A
111 133Right-handed alpha
Helix 4
AA4
A
140 142Right-handed 310
Helix 5
AA5
A
162 170Right-handed alpha
Helix 6
AA6
A
189 193Right-handed 310
Helix 7
AA7
A
206 224Right-handed alpha
Helix 8
AA8
A
227 231Right-handed 310
Helix 9
AA9
A
234 243Right-handed alpha
Helix 10
AB1
A
248 252Right-handed 310
Helix 11
AB2
A
257 268Right-handed alpha
Helix 12
AB3
A
271 275Right-handed 310
Helix 13
AB4
A
277 293Right-handed alpha
Helix 14
AB5
B
13 15Right-handed 310
Helix 15
AB6
B
53 68Right-handed alpha
Helix 16
AB7
B
100 105Right-handed alpha
Helix 17
AB8
B
111 132Right-handed alpha
Helix 18
AB9
B
140 142Right-handed 310
Helix 19
AC1
B
162 170Right-handed alpha
Helix 20
AC2
B
194 198Right-handed 310
Helix 21
AC3
B
206 224Right-handed alpha
Helix 22
AC4
B
233 244Right-handed alpha
Helix 23
AC5
B
248 252Right-handed 310
Helix 24
AC6
B
257 268Right-handed alpha
Helix 25
AC7
B
271 275Right-handed 310
Helix 26
AC8
B
277 292Right-handed alpha
Helix 27
AC9
C
57 69Right-handed alpha
Helix 28
AD1
C
100 105Right-handed alpha
Helix 29
AD2
C
111 132Right-handed alpha
Helix 30
AD3
C
140 142Right-handed 310
Helix 31
AD4
C
162 169Right-handed alpha
Helix 32
AD5
C
206 224Right-handed alpha
Helix 33
AD6
C
233 243Right-handed alpha
Helix 34
AD7
C
248 252Right-handed 310
Helix 35
AD8
C
257 268Right-handed alpha
Helix 36
AD9
C
271 275Right-handed 310
Helix 37
AE1
C
277 293Right-handed alpha
Helix 38
AE2
D
5 11Right-handed 310
Helix 39
AE3
D
57 69Right-handed alpha
Helix 40
AE4
D
100 106Right-handed alpha
Helix 41
AE5
D
111 132Right-handed alpha
Helix 42
AE6
D
140 142Right-handed 310
Helix 43
AE7
D
162 170Right-handed alpha
Helix 44
AE8
D
208 224Right-handed alpha
Helix 45
AE9
D
234 243Right-handed alpha
Helix 46
AF1
D
257 268Right-handed alpha
Helix 47
AF2
D
277 292Right-handed alpha
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There are 9 sheets in PDB entry 6C4D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
78 83parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
41 49anti-parallel
Strand 5
A
31 35anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
144 146anti-parallel
Strand 3
A
152 154anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
78 84parallel
Strand 3
B
87 93anti-parallel
Strand 4
B
40 48anti-parallel
Strand 5
B
31 36anti-parallel
Strand 6
B
17 22anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
144 146anti-parallel
Strand 3
B
152 154anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
78 84parallel
Strand 3
C
87 93anti-parallel
Strand 4
C
40 46anti-parallel
Strand 5
C
31 36anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 99first strand
Strand 2
C
144 146anti-parallel
Strand 3
C
152 154anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 32first strand
Strand 2
D
40 49anti-parallel
Strand 3
D
35 36anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 32first strand
Strand 2
D
40 49anti-parallel
Strand 3
D
87 93anti-parallel
Strand 4
D
78 84anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
98 99first strand
Strand 2
D
144 146anti-parallel
Strand 3
D
152 154anti-parallel
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