Analysis of interatomic Contacts of Structural Units in PDB entry:
6C4M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C4M entry

There is 1 chain in PDB entry 6C4M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1GLN 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6C4M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
1 5Right-handed 310
Helix 2
AA2
C
13 27Right-handed alpha
Helix 3
AA3
C
38 51Right-handed alpha
Helix 4
AA4
C
60 65Right-handed 310
Helix 5
AA5
C
79 83Right-handed 310
Helix 6
AA6
C
95 97Right-handed 310
Helix 7
AA7
C
98 104Right-handed alpha
Helix 8
AA8
C
105 106Right-handed 310
Helix 9
AA9
C
107 111Right-handed 310
Helix 10
AB1
C
125 137Right-handed alpha
Helix 11
AB2
C
206 218Right-handed alpha
Helix 12
AB3
C
228 234Right-handed alpha
Helix 13
AB4
C
236 247Right-handed alpha
Helix 14
AB5
C
248 257Right-handed alpha
Helix 15
AB6
C
275 296Right-handed alpha
Helix 16
AB7
C
302 311Right-handed alpha
Helix 17
AB8
C
320 327Right-handed alpha
Helix 18
AB9
C
328 330Right-handed 310
Helix 19
AC1
C
331 347Right-handed alpha
Helix 20
AC2
C
348 348Right-handed 310
Helix 21
AC3
C
362 366Right-handed 310
Helix 22
AC4
C
382 402Right-handed alpha
Helix 23
AC5
C
406 428Right-handed alpha
Helix 24
AC6
C
429 432Right-handed 310
Helix 25
AC7
C
433 437Right-handed 310
Helix 26
AC8
C
440 454Right-handed alpha
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There are 3 sheets in PDB entry 6C4M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 77first strand
Strand 2
C
31 34parallel
Strand 3
C
7 10parallel
Strand 4
C
89 92parallel
Strand 5
C
116 119parallel
Strand 6
C
143 147parallel
Strand 7
C
194 199anti-parallel
Strand 8
C
222 225parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 72first strand
Strand 2
C
53 58anti-parallel
Strand 3
C
185 191parallel
Strand 4
C
152 155anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
372 373first strand
Strand 2
C
379 380anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il