Analysis of interatomic Contacts of Structural Units in PDB entry:
6C5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C5B entry

There are 2 chains in PDB entry 6C5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 10ILE 341
B
 VAL 10ILE 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6C5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 21Right-handed alpha
Helix 2
AA2
A
21 36Right-handed alpha
Helix 3
AA3
A
36 41Right-handed alpha
Helix 4
AA4
A
48 56Right-handed alpha
Helix 5
AA5
A
58 71Right-handed alpha
Helix 6
AA6
A
86 91Right-handed alpha
Helix 7
AA7
A
100 109Right-handed alpha
Helix 8
AA8
A
109 116Right-handed alpha
Helix 9
AA9
A
117 125Right-handed alpha
Helix 10
AB1
A
127 134Right-handed alpha
Helix 11
AB2
A
136 144Right-handed alpha
Helix 12
AB3
A
144 170Right-handed alpha
Helix 13
AB4
A
186 196Right-handed alpha
Helix 14
AB5
A
206 220Right-handed alpha
Helix 15
AB6
A
222 224Right-handed 310
Helix 16
AB7
A
249 253Right-handed 310
Helix 17
AB8
A
254 269Right-handed alpha
Helix 18
AB9
A
289 303Right-handed alpha
Helix 19
AC1
A
308 318Right-handed alpha
Helix 20
AC2
B
11 21Right-handed alpha
Helix 21
AC3
B
21 36Right-handed alpha
Helix 22
AC4
B
36 41Right-handed alpha
Helix 23
AC5
B
48 56Right-handed alpha
Helix 24
AC6
B
58 71Right-handed alpha
Helix 25
AC7
B
86 91Right-handed alpha
Helix 26
AC8
B
100 109Right-handed alpha
Helix 27
AC9
B
109 116Right-handed alpha
Helix 28
AD1
B
117 125Right-handed alpha
Helix 29
AD2
B
127 134Right-handed alpha
Helix 30
AD3
B
136 144Right-handed alpha
Helix 31
AD4
B
144 170Right-handed alpha
Helix 32
AD5
B
186 196Right-handed alpha
Helix 33
AD6
B
206 221Right-handed alpha
Helix 34
AD7
B
249 253Right-handed 310
Helix 35
AD8
B
254 269Right-handed alpha
Helix 36
AD9
B
289 303Right-handed alpha
Helix 37
AE1
B
308 318Right-handed alpha
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There are 4 sheets in PDB entry 6C5B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
82 84anti-parallel
Strand 3
A
76 79anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 230first strand
Strand 2
A
200 205parallel
Strand 3
A
177 181parallel
Strand 4
A
243 247parallel
Strand 5
A
274 279parallel
Strand 6
A
334 340anti-parallel
Strand 7
A
321 328anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
82 84anti-parallel
Strand 3
B
76 79anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 230first strand
Strand 2
B
200 205parallel
Strand 3
B
177 181parallel
Strand 4
B
243 247parallel
Strand 5
B
274 279parallel
Strand 6
B
334 340anti-parallel
Strand 7
B
321 328anti-parallel
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