Analysis of interatomic Contacts of Structural Units in PDB entry:
6C5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C5C entry

There are 2 chains in PDB entry 6C5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2THR 387
B
 SER -2THR 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 6C5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 3Right-handed 310
Helix 2
AA2
A
20 32Right-handed alpha
Helix 3
AA3
A
43 47Right-handed alpha
Helix 4
AA4
A
48 66Right-handed alpha
Helix 5
AA5
A
79 83Right-handed 310
Helix 6
AA6
A
84 98Right-handed alpha
Helix 7
AA7
A
111 125Right-handed alpha
Helix 8
AA8
A
126 128Right-handed 310
Helix 9
AA9
A
137 143Right-handed alpha
Helix 10
AB1
A
175 180Right-handed 310
Helix 11
AB2
A
181 200Right-handed alpha
Helix 12
AB3
A
200 219Right-handed alpha
Helix 13
AB4
A
224 227Right-handed 310
Helix 14
AB5
A
228 248Right-handed alpha
Helix 15
AB6
A
255 260Right-handed alpha
Helix 16
AB7
A
263 275Right-handed alpha
Helix 17
AB8
A
279 298Right-handed alpha
Helix 18
AB9
A
302 316Right-handed alpha
Helix 19
AC1
A
324 332Right-handed alpha
Helix 20
AC2
A
333 338Right-handed 310
Helix 21
AC3
A
339 351Right-handed alpha
Helix 22
AC4
A
371 373Right-handed 310
Helix 23
AC5
A
378 387Right-handed alpha
Helix 24
AC6
B
20 32Right-handed alpha
Helix 25
AC7
B
43 47Right-handed alpha
Helix 26
AC8
B
48 66Right-handed alpha
Helix 27
AC9
B
79 83Right-handed 310
Helix 28
AD1
B
84 98Right-handed alpha
Helix 29
AD2
B
111 125Right-handed alpha
Helix 30
AD3
B
126 128Right-handed 310
Helix 31
AD4
B
137 143Right-handed alpha
Helix 32
AD5
B
175 180Right-handed 310
Helix 33
AD6
B
181 200Right-handed alpha
Helix 34
AD7
B
200 219Right-handed alpha
Helix 35
AD8
B
224 227Right-handed 310
Helix 36
AD9
B
228 250Right-handed alpha
Helix 37
AE1
B
256 262Right-handed 310
Helix 38
AE2
B
263 275Right-handed alpha
Helix 39
AE3
B
279 298Right-handed alpha
Helix 40
AE4
B
302 316Right-handed alpha
Helix 41
AE5
B
324 332Right-handed alpha
Helix 42
AE6
B
333 338Right-handed 310
Helix 43
AE7
B
339 347Right-handed alpha
Helix 44
AE8
B
371 373Right-handed 310
Helix 45
AE9
B
378 387Right-handed alpha
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There are 8 sheets in PDB entry 6C5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
11 17anti-parallel
Strand 3
A
169 173parallel
Strand 4
A
130 135parallel
Strand 5
A
105 110parallel
Strand 6
A
36 42parallel
Strand 7
A
70 76parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 154first strand
Strand 2
A
157 164anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 360first strand
Strand 2
A
375 376anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 365first strand
Strand 2
A
368 369anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
11 17anti-parallel
Strand 3
B
169 173parallel
Strand 4
B
130 135parallel
Strand 5
B
105 110parallel
Strand 6
B
36 42parallel
Strand 7
B
70 76parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 152first strand
Strand 2
B
161 164anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 360first strand
Strand 2
B
375 377anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 365first strand
Strand 2
B
368 369anti-parallel
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