Analysis of interatomic Contacts of Structural Units in PDB entry:
6C5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C5D entry

There are 4 chains in PDB entry 6C5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ASN 121
D
 MSE 1GLU 131
B
 MSE 1GLU 131
C
 MSE 1ASN 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6C5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 16Right-handed alpha
Helix 2
AA2
A
21 28Right-handed alpha
Helix 3
AA3
A
64 80Right-handed alpha
Helix 4
AA4
A
112 121Right-handed alpha
Helix 5
AA5
D
9 15Right-handed alpha
Helix 6
AA6
D
21 28Right-handed alpha
Helix 7
AA7
D
64 80Right-handed alpha
Helix 8
AA8
D
112 120Right-handed alpha
Helix 9
AA9
B
9 15Right-handed alpha
Helix 10
AB1
B
21 28Right-handed alpha
Helix 11
AB2
B
64 80Right-handed alpha
Helix 12
AB3
B
112 121Right-handed alpha
Helix 13
AB4
C
9 16Right-handed alpha
Helix 14
AB5
C
21 28Right-handed alpha
Helix 15
AB6
C
64 78Right-handed alpha
Helix 16
AB7
C
112 121Right-handed alpha
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There are 2 sheets in PDB entry 6C5D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
48 54anti-parallel
Strand 3
A
37 42anti-parallel
Strand 4
A
100 106parallel
Strand 5
A
90 97anti-parallel
Strand 6
A
2 7anti-parallel
Strand 7
B
125 129parallel
Strand 8
B
2 7anti-parallel
Strand 9
B
90 97anti-parallel
Strand 10
B
100 106anti-parallel
Strand 11
B
37 42parallel
Strand 12
B
48 54anti-parallel
Strand 13
B
60 61anti-parallel
Strand 14
B
18 19anti-parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 19first strand
Strand 2
D
60 63anti-parallel
Strand 3
D
48 54anti-parallel
Strand 4
D
37 42anti-parallel
Strand 5
D
100 106parallel
Strand 6
D
90 97anti-parallel
Strand 7
D
2 7anti-parallel
Strand 8
D
125 131anti-parallel
Strand 9
C
2 7parallel
Strand 10
C
90 97anti-parallel
Strand 11
C
100 106anti-parallel
Strand 12
C
37 42parallel
Strand 13
C
48 54anti-parallel
Strand 14
C
60 63anti-parallel
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