Analysis of interatomic Contacts of Structural Units in PDB entry:
6C5R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C5R entry

There are 8 chains in PDB entry 6C5R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 5	ASP 195
B	GLY 4	GLU 196
D	MET -1	GLU 196
F	MET 0	ASP 195
H	MET -1	GLU 196
C	LYS 3	LYS 198
E	THR 2	MET 197
G	LYS 3	TRP 194

There are 38 helices in PDB entry 6C5R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	67	Right-handed alpha
Helix 2	AA2	A	107	116	Right-handed alpha
Helix 3	AA3	A	138	167	Right-handed alpha
Helix 4	AA4	A	168	191	Right-handed alpha
Helix 5	AA5	B	56	65	Right-handed alpha
Helix 6	AA6	B	66	68	Right-handed 310
Helix 7	AA7	B	107	115	Right-handed alpha
Helix 8	AA8	B	138	159	Right-handed alpha
Helix 9	AA9	B	168	190	Right-handed alpha
Helix 10	AB1	D	56	68	Right-handed alpha
Helix 11	AB2	D	107	115	Right-handed alpha
Helix 12	AB3	D	138	143	Right-handed alpha
Helix 13	AB4	D	143	159	Right-handed alpha
Helix 14	AB5	D	168	191	Right-handed alpha
Helix 15	AB6	F	56	68	Right-handed alpha
Helix 16	AB7	F	107	115	Right-handed alpha
Helix 17	AB8	F	138	143	Right-handed alpha
Helix 18	AB9	F	143	158	Right-handed alpha
Helix 19	AC1	F	168	190	Right-handed alpha
Helix 20	AC2	H	56	68	Right-handed alpha
Helix 21	AC3	H	107	115	Right-handed alpha
Helix 22	AC4	H	138	143	Right-handed alpha
Helix 23	AC5	H	143	158	Right-handed alpha
Helix 24	AC6	H	168	191	Right-handed alpha
Helix 25	AC7	C	56	67	Right-handed alpha
Helix 26	AC8	C	107	116	Right-handed alpha
Helix 27	AC9	C	117	119	Right-handed 310
Helix 28	AD1	C	138	167	Right-handed alpha
Helix 29	AD2	C	168	191	Right-handed alpha
Helix 30	AD3	E	56	67	Right-handed alpha
Helix 31	AD4	E	107	119	Right-handed alpha
Helix 32	AD5	E	138	167	Right-handed alpha
Helix 33	AD6	E	168	191	Right-handed alpha
Helix 34	AD7	G	56	67	Right-handed alpha
Helix 35	AD8	G	107	116	Right-handed alpha
Helix 36	AD9	G	138	143	Right-handed alpha
Helix 37	AE1	G	143	167	Right-handed alpha
Helix 38	AE2	G	168	191	Right-handed alpha

There are 11 sheets in PDB entry 6C5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	14	16	anti-parallel
Strand 3	A	49	51	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	82	86	anti-parallel
Strand 3	A	120	125	anti-parallel
Strand 4	A	132	135	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	8	first strand
Strand 2	B	14	17	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	83	87	anti-parallel
Strand 3	B	120	124	anti-parallel
Strand 4	B	132	135	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	51	first strand
Strand 2	D	14	20	anti-parallel
Strand 3	D	4	8	anti-parallel
Strand 4	D	132	135	parallel
Strand 5	D	120	125	anti-parallel
Strand 6	D	82	86	anti-parallel
Strand 7	D	100	101	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	73	first strand
Strand 2	D	76	78	anti-parallel

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There are 14 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	51	first strand
Strand 2	F	14	17	anti-parallel
Strand 3	F	4	8	anti-parallel
Strand 4	F	132	135	parallel
Strand 5	F	120	125	anti-parallel
Strand 6	F	82	88	anti-parallel
Strand 7	F	98	102	anti-parallel
Strand 8	E	47	51	parallel
Strand 9	E	14	18	anti-parallel
Strand 10	E	4	8	anti-parallel
Strand 11	E	132	135	parallel
Strand 12	E	120	125	anti-parallel
Strand 13	E	82	86	anti-parallel
Strand 14	E	100	102	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	73	first strand
Strand 2	F	76	78	anti-parallel

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There are 14 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	51	first strand
Strand 2	H	14	20	anti-parallel
Strand 3	H	3	8	anti-parallel
Strand 4	H	132	135	parallel
Strand 5	H	121	125	anti-parallel
Strand 6	H	82	86	anti-parallel
Strand 7	H	100	102	anti-parallel
Strand 8	G	47	51	parallel
Strand 9	G	14	18	anti-parallel
Strand 10	G	4	8	anti-parallel
Strand 11	G	132	135	parallel
Strand 12	G	120	125	anti-parallel
Strand 13	G	82	86	anti-parallel
Strand 14	G	100	101	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	73	first strand
Strand 2	H	76	78	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	51	first strand
Strand 2	C	14	17	anti-parallel
Strand 3	C	4	8	anti-parallel
Strand 4	C	132	135	parallel
Strand 5	C	122	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C5R

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C5R