Analysis of interatomic Contacts of Structural Units in PDB entry:
6C5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C5V entry

There are 5 chains in PDB entry 6C5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 20	TYR 674
B	PRO 27	ALA 132
C	THR 43	GLN 219
H	VAL 2	PRO 219
L	TYR 2	THR 213

There are 47 helices in PDB entry 6C5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	45	Right-handed alpha
Helix 2	AA2	A	51	60	Right-handed alpha
Helix 3	AA3	A	64	75	Right-handed alpha
Helix 4	AA4	A	103	107	Right-handed 310
Helix 5	AA5	A	123	131	Right-handed alpha
Helix 6	AA6	A	202	204	Right-handed 310
Helix 7	AA7	A	212	215	Right-handed 310
Helix 8	AA8	A	231	239	Right-handed alpha
Helix 9	AA9	A	245	256	Right-handed alpha
Helix 10	AB1	A	257	275	Right-handed alpha
Helix 11	AB2	A	284	307	Right-handed alpha
Helix 12	AB3	A	315	336	Right-handed alpha
Helix 13	AB4	A	345	357	Right-handed alpha
Helix 14	AB5	A	358	359	Right-handed 310
Helix 15	AB6	A	360	367	Right-handed 310
Helix 16	AB7	A	368	383	Right-handed alpha
Helix 17	AB8	A	384	387	Right-handed 310
Helix 18	AB9	A	391	405	Right-handed alpha
Helix 19	AC1	A	414	432	Right-handed alpha
Helix 20	AC2	A	439	453	Right-handed alpha
Helix 21	AC3	A	455	469	Right-handed alpha
Helix 22	AC4	A	470	475	Right-handed alpha
Helix 23	AC5	A	476	481	Right-handed 310
Helix 24	AC6	A	487	494	Right-handed alpha
Helix 25	AC7	A	502	517	Right-handed alpha
Helix 26	AC8	A	521	525	Right-handed 310
Helix 27	AC9	A	529	535	Right-handed 310
Helix 28	AD1	A	537	539	Right-handed 310
Helix 29	AD2	A	636	646	Right-handed alpha
Helix 30	AD3	B	41	45	Right-handed 310
Helix 31	AD4	B	82	96	Right-handed alpha
Helix 32	AD5	B	97	100	Right-handed 310
Helix 33	AD6	B	101	117	Right-handed alpha
Helix 34	AD7	B	120	125	Right-handed 310
Helix 35	AD8	C	66	71	Right-handed alpha
Helix 36	AD9	C	124	134	Right-handed alpha
Helix 37	AE1	C	148	154	Right-handed alpha
Helix 38	AE2	H	28	32	Right-handed 310
Helix 39	AE3	H	83	87	Right-handed 310
Helix 40	AE4	H	162	164	Right-handed 310
Helix 41	AE5	H	191	197	Right-handed 310
Helix 42	AE6	H	207	210	Right-handed 310
Helix 43	AE7	L	26	30	Right-handed 310
Helix 44	AE8	L	78	82	Right-handed 310
Helix 45	AE9	L	92	96	Right-handed 310
Helix 46	AF1	L	125	131	Right-handed alpha
Helix 47	AF2	L	185	192	Right-handed alpha

There are 19 sheets in PDB entry 6C5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	38	first strand
Strand 2	A	23	29	anti-parallel
Strand 3	B	47	50	parallel
Strand 4	B	61	65	anti-parallel
Strand 5	B	77	81	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	119	122	parallel
Strand 3	A	312	314	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	138	first strand
Strand 2	A	151	154	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	220	first strand
Strand 2	A	224	229	anti-parallel
Strand 3	A	191	200	anti-parallel
Strand 4	A	177	185	anti-parallel
Strand 5	A	167	173	anti-parallel
Strand 6	A	156	162	anti-parallel
Strand 7	A	339	341	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	547	first strand
Strand 2	A	550	555	anti-parallel
Strand 3	A	578	583	anti-parallel
Strand 4	A	566	567	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	602	first strand
Strand 2	A	667	670	parallel
Strand 3	A	656	661	anti-parallel
Strand 4	A	618	623	anti-parallel
Strand 5	A	627	633	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	111	first strand
Strand 2	C	114	123	anti-parallel
Strand 3	C	212	218	anti-parallel
Strand 4	C	140	141	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	193	195	anti-parallel
Strand 3	C	203	204	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	99	first strand
Strand 2	H	102	103	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	142	151	anti-parallel
Strand 3	H	182	190	anti-parallel
Strand 4	H	169	176	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	157	160	first strand
Strand 2	H	201	206	anti-parallel
Strand 3	H	211	216	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	83	91	anti-parallel
Strand 4	L	33	37	anti-parallel
Strand 5	L	44	47	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	83	91	anti-parallel
Strand 4	L	98	101	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	69	74	anti-parallel
Strand 3	L	61	66	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	122	first strand
Strand 2	L	136	143	anti-parallel
Strand 3	L	176	182	anti-parallel
Strand 4	L	163	165	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	122	first strand
Strand 2	L	136	143	anti-parallel
Strand 3	L	176	182	anti-parallel
Strand 4	L	169	170	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	157	159	first strand
Strand 2	L	149	154	anti-parallel
Strand 3	L	195	201	anti-parallel
Strand 4	L	204	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C5V