Analysis of interatomic Contacts of Structural Units in PDB entry:
6C5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C5W entry

There are 4 chains in PDB entry 6C5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 100TRP 414
B
 LYS 101GLU 416
C
 VAL 2SER 118
E
 VAL 2SER 118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6C5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
154 165Right-handed alpha
Helix 2
AA2
A
215 219Right-handed 310
Helix 3
AA3
A
235 244Right-handed alpha
Helix 4
AA4
A
266 271Right-handed alpha
Helix 5
AA5
A
271 296Right-handed alpha
Helix 6
AA6
A
304 327Right-handed alpha
Helix 7
AA7
A
331 354Right-handed alpha
Helix 8
AA8
A
362 374Right-handed alpha
Helix 9
AA9
A
393 410Right-handed alpha
Helix 10
AB1
B
154 165Right-handed alpha
Helix 11
AB2
B
235 244Right-handed alpha
Helix 12
AB3
B
266 271Right-handed alpha
Helix 13
AB4
B
271 280Right-handed alpha
Helix 14
AB5
B
280 328Right-handed alpha
Helix 15
AB6
B
331 350Right-handed alpha
Helix 16
AB7
B
393 411Right-handed alpha
Helix 17
AB8
C
86 90Right-handed 310
Helix 18
AB9
E
86 90Right-handed 310
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There are 10 sheets in PDB entry 6C5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 149first strand
Strand 2
A
112 116anti-parallel
Strand 3
A
102 106anti-parallel
Strand 4
A
260 263parallel
Strand 5
A
249 253anti-parallel
Strand 6
A
180 184anti-parallel
Strand 7
A
228 229anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
174 176anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 149first strand
Strand 2
B
112 116anti-parallel
Strand 3
B
102 106anti-parallel
Strand 4
B
260 263parallel
Strand 5
B
249 253anti-parallel
Strand 6
B
180 183anti-parallel
Strand 7
B
229 230anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 171first strand
Strand 2
B
174 176anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
17 25anti-parallel
Strand 3
C
77 83anti-parallel
Strand 4
C
67 72anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
112 117parallel
Strand 3
C
91 98anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
45 52anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
112 117parallel
Strand 3
C
91 98anti-parallel
Strand 4
C
106 108anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
17 25anti-parallel
Strand 3
E
77 83anti-parallel
Strand 4
E
67 72anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 52first strand
Strand 2
E
33 39anti-parallel
Strand 3
E
91 98anti-parallel
Strand 4
E
107 108anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 52first strand
Strand 2
E
33 39anti-parallel
Strand 3
E
91 98anti-parallel
Strand 4
E
112 114anti-parallel
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