Analysis of interatomic Contacts of Structural Units in PDB entry:
6C5Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C5Z entry

There are 4 chains in PDB entry 6C5Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 2	LYS 465
B	ALA 103	LYS 465
C	MET 1	VAL 466
D	MET 1	ASP 36

There are116 helices in PDB entry 6C5Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	27	Right-handed alpha
Helix 2	AA2	A	38	46	Right-handed alpha
Helix 3	AA3	A	56	63	Right-handed alpha
Helix 4	AA4	A	74	82	Right-handed alpha
Helix 5	AA5	A	106	119	Right-handed alpha
Helix 6	AA6	A	135	147	Right-handed alpha
Helix 7	AA7	A	167	174	Right-handed alpha
Helix 8	AA8	A	185	201	Right-handed alpha
Helix 9	AA9	A	204	206	Right-handed 310
Helix 10	AB1	A	213	245	Right-handed alpha
Helix 11	AB2	A	247	258	Right-handed alpha
Helix 12	AB3	A	276	291	Right-handed alpha
Helix 13	AB4	A	293	322	Right-handed alpha
Helix 14	AB5	A	348	360	Right-handed alpha
Helix 15	AB6	A	372	380	Right-handed alpha
Helix 16	AB7	A	390	394	Right-handed alpha
Helix 17	AB8	A	400	406	Right-handed alpha
Helix 18	AB9	A	417	421	Right-handed 310
Helix 19	AC1	A	424	431	Right-handed alpha
Helix 20	AC2	A	448	456	Right-handed alpha
Helix 21	AC3	B	111	115	Right-handed alpha
Helix 22	AC4	B	139	144	Right-handed alpha
Helix 23	AC5	B	168	169	Right-handed 310
Helix 24	AC6	B	171	173	Right-handed 310
Helix 25	AC7	B	190	200	Right-handed alpha
Helix 26	AC8	B	204	206	Right-handed 310
Helix 27	AC9	B	213	243	Right-handed alpha
Helix 28	AD1	B	247	257	Right-handed alpha
Helix 29	AD2	B	275	290	Right-handed alpha
Helix 30	AD3	B	293	322	Right-handed alpha
Helix 31	AD4	B	348	361	Right-handed alpha
Helix 32	AD5	B	372	381	Right-handed alpha
Helix 33	AD6	B	390	394	Right-handed alpha
Helix 34	AD7	B	400	405	Right-handed alpha
Helix 35	AD8	B	417	421	Right-handed 310
Helix 36	AD9	B	424	432	Right-handed alpha
Helix 37	AE1	B	448	456	Right-handed alpha
Helix 38	AE2	C	15	27	Right-handed alpha
Helix 39	AE3	C	38	46	Right-handed alpha
Helix 40	AE4	C	56	65	Right-handed alpha
Helix 41	AE5	C	74	82	Right-handed alpha
Helix 42	AE6	C	106	119	Right-handed alpha
Helix 43	AE7	C	135	147	Right-handed alpha
Helix 44	AE8	C	167	174	Right-handed alpha
Helix 45	AE9	C	185	200	Right-handed alpha
Helix 46	AF1	C	204	206	Right-handed 310
Helix 47	AF2	C	212	245	Right-handed alpha
Helix 48	AF3	C	247	257	Right-handed alpha
Helix 49	AF4	C	276	291	Right-handed alpha
Helix 50	AF5	C	293	322	Right-handed alpha
Helix 51	AF6	C	348	359	Right-handed alpha
Helix 52	AF7	C	372	380	Right-handed alpha
Helix 53	AF8	C	390	394	Right-handed alpha
Helix 54	AF9	C	400	406	Right-handed alpha
Helix 55	AG1	C	419	423	Right-handed 310
Helix 56	AG2	C	424	431	Right-handed alpha
Helix 57	AG3	C	448	456	Right-handed alpha
Helix 58	AG4	D	15	27	Right-handed alpha
Helix 59	AG5	D	38	46	Right-handed alpha
Helix 60	AG6	D	56	65	Right-handed alpha
Helix 61	AG7	D	74	82	Right-handed alpha
Helix 62	AG8	D	106	119	Right-handed alpha
Helix 63	AG9	D	135	147	Right-handed alpha
Helix 64	AH1	D	167	174	Right-handed alpha
Helix 65	AH2	D	185	200	Right-handed alpha
Helix 66	AH3	D	204	206	Right-handed 310
Helix 67	AH4	D	213	245	Right-handed alpha
Helix 68	AH5	D	247	257	Right-handed alpha
Helix 69	AH6	D	276	291	Right-handed alpha
Helix 70	AH7	D	293	322	Right-handed alpha
Helix 71	AH8	D	348	360	Right-handed alpha
Helix 72	AH9	D	372	380	Right-handed alpha
Helix 73	AI1	D	390	394	Right-handed alpha
Helix 74	AI2	D	401	406	Right-handed alpha
Helix 75	AI3	D	417	421	Right-handed 310
Helix 76	AI4	D	424	431	Right-handed alpha
Helix 77	AI5	D	448	456	Right-handed alpha
Helix 78	AI6	E	15	27	Right-handed alpha
Helix 79	AI7	E	38	47	Right-handed alpha
Helix 80	AI8	E	56	65	Right-handed alpha
Helix 81	AI9	E	74	82	Right-handed alpha
Helix 82	AJ1	E	106	120	Right-handed alpha
Helix 83	AJ2	E	135	147	Right-handed alpha
Helix 84	AJ3	E	167	174	Right-handed alpha
Helix 85	AJ4	E	185	200	Right-handed alpha
Helix 86	AJ5	E	213	245	Right-handed alpha
Helix 87	AJ6	E	247	257	Right-handed alpha
Helix 88	AJ7	E	276	291	Right-handed alpha
Helix 89	AJ8	E	293	322	Right-handed alpha
Helix 90	AJ9	E	348	360	Right-handed alpha
Helix 91	AK1	E	372	381	Right-handed alpha
Helix 92	AK2	E	390	394	Right-handed alpha
Helix 93	AK3	E	400	406	Right-handed alpha
Helix 94	AK4	E	417	423	Right-handed 310
Helix 95	AK5	E	424	431	Right-handed alpha
Helix 96	AK6	E	448	455	Right-handed alpha
Helix 97	AK7	F	15	27	Right-handed alpha
Helix 98	AK8	F	38	46	Right-handed alpha
Helix 99	AK9	F	56	65	Right-handed alpha
Helix 100	AL1	F	74	82	Right-handed alpha
Helix 101	AL2	F	106	119	Right-handed alpha
Helix 102	AL3	F	135	147	Right-handed alpha
Helix 103	AL4	F	167	174	Right-handed alpha
Helix 104	AL5	F	185	200	Right-handed alpha
Helix 105	AL6	F	204	206	Right-handed 310
Helix 106	AL7	F	212	245	Right-handed alpha
Helix 107	AL8	F	247	257	Right-handed alpha
Helix 108	AL9	F	276	291	Right-handed alpha
Helix 109	AM1	F	293	322	Right-handed alpha
Helix 110	AM2	F	348	360	Right-handed alpha
Helix 111	AM3	F	372	380	Right-handed alpha
Helix 112	AM4	F	390	394	Right-handed alpha
Helix 113	AM5	F	400	405	Right-handed alpha
Helix 114	AM6	F	417	423	Right-handed 310
Helix 115	AM7	F	424	431	Right-handed alpha
Helix 116	AM8	F	448	456	Right-handed alpha

There are 17 sheets in PDB entry 6C5Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	72	first strand
Strand 2	A	31	35	parallel
Strand 3	A	6	10	parallel
Strand 4	A	84	87	parallel
Strand 5	A	124	128	parallel
Strand 6	A	154	158	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	182	first strand
Strand 2	A	208	212	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	363	367	parallel
Strand 3	A	330	334	parallel
Strand 4	A	410	413	parallel
Strand 5	A	437	440	parallel
Strand 6	A	458	461	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	182	first strand
Strand 2	B	208	212	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	397	first strand
Strand 2	B	363	367	parallel
Strand 3	B	330	334	parallel
Strand 4	B	410	413	parallel
Strand 5	B	437	440	parallel
Strand 6	B	458	461	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	C	31	35	parallel
Strand 3	C	6	10	parallel
Strand 4	C	84	87	parallel
Strand 5	C	123	128	parallel
Strand 6	C	153	158	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	181	first strand
Strand 2	C	208	211	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	397	first strand
Strand 2	C	363	367	parallel
Strand 3	C	330	334	parallel
Strand 4	C	410	413	parallel
Strand 5	C	437	440	parallel
Strand 6	C	458	461	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	72	first strand
Strand 2	D	31	35	parallel
Strand 3	D	6	10	parallel
Strand 4	D	84	87	parallel
Strand 5	D	122	128	parallel
Strand 6	D	152	158	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	182	first strand
Strand 2	D	208	212	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	397	first strand
Strand 2	D	363	367	parallel
Strand 3	D	330	334	parallel
Strand 4	D	410	413	parallel
Strand 5	D	436	440	parallel
Strand 6	D	457	461	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	72	first strand
Strand 2	E	31	35	parallel
Strand 3	E	6	10	parallel
Strand 4	E	84	87	parallel
Strand 5	E	123	128	parallel
Strand 6	E	153	158	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	182	first strand
Strand 2	E	208	212	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	395	397	first strand
Strand 2	E	363	367	parallel
Strand 3	E	330	334	parallel
Strand 4	E	410	413	parallel
Strand 5	E	437	440	parallel
Strand 6	E	458	461	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	72	first strand
Strand 2	F	31	35	parallel
Strand 3	F	6	10	parallel
Strand 4	F	84	87	parallel
Strand 5	F	123	128	parallel
Strand 6	F	153	158	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	181	first strand
Strand 2	F	208	211	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	395	397	first strand
Strand 2	F	363	367	parallel
Strand 3	F	330	334	parallel
Strand 4	F	410	413	parallel
Strand 5	F	437	440	parallel
Strand 6	F	458	461	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C5Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C5Z