Analysis of interatomic Contacts of Structural Units in PDB entry:
6C6P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C6P entry

There are 2 chains in PDB entry 6C6P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 123TYR 571
B
ASP 123TYR 571
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6C6P. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
132 145Right-handed alpha
Helix 2
AA2
A
168 178Right-handed alpha
Helix 3
AA3
A
180 185Right-handed 310
Helix 4
AA4
A
225 239Right-handed alpha
Helix 5
AA5
A
355 363Right-handed alpha
Helix 6
AA6
A
364 368Right-handed 310
Helix 7
AA7
A
369 383Right-handed alpha
Helix 8
AA8
A
407 410Right-handed 310
Helix 9
AA9
A
414 418Right-handed 310
Helix 10
AB1
A
419 436Right-handed alpha
Helix 11
AB2
A
443 460Right-handed alpha
Helix 12
AB3
A
461 478Right-handed alpha
Helix 13
AB4
A
481 497Right-handed alpha
Helix 14
AB5
A
499 510Right-handed alpha
Helix 15
AB6
A
515 538Right-handed alpha
Helix 16
AB7
A
539 543Right-handed 310
Helix 17
AB8
A
544 568Right-handed alpha
Helix 18
AB9
B
132 145Right-handed alpha
Helix 19
AC1
B
168 178Right-handed alpha
Helix 20
AC2
B
180 185Right-handed 310
Helix 21
AC3
B
225 239Right-handed alpha
Helix 22
AC4
B
355 363Right-handed alpha
Helix 23
AC5
B
364 368Right-handed 310
Helix 24
AC6
B
369 371Right-handed 310
Helix 25
AC7
B
372 382Right-handed alpha
Helix 26
AC8
B
407 410Right-handed 310
Helix 27
AC9
B
414 418Right-handed 310
Helix 28
AD1
B
419 437Right-handed alpha
Helix 29
AD2
B
443 460Right-handed alpha
Helix 30
AD3
B
461 478Right-handed alpha
Helix 31
AD4
B
481 497Right-handed alpha
Helix 32
AD5
B
499 510Right-handed alpha
Helix 33
AD6
B
515 538Right-handed alpha
Helix 34
AD7
B
539 544Right-handed 310
Helix 35
AD8
B
545 568Right-handed alpha
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There are 6 sheets in PDB entry 6C6P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
273 277first strand
Strand 2
A
259 267anti-parallel
Strand 3
A
243 256anti-parallel
Strand 4
A
149 153parallel
Strand 5
A
126 129parallel
Strand 6
A
280 283parallel
Strand 7
A
403 405parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
166 167first strand
Strand 2
A
221 223anti-parallel
Strand 3
A
190 192anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
204 209first strand
Strand 2
A
194 199anti-parallel
Strand 3
A
321 325parallel
Strand 4
A
332 336anti-parallel
Strand 5
A
341 348anti-parallel
Strand 6
A
301 312anti-parallel
Strand 7
A
386 392anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
273 277first strand
Strand 2
B
259 267anti-parallel
Strand 3
B
243 256anti-parallel
Strand 4
B
149 153parallel
Strand 5
B
126 129parallel
Strand 6
B
280 283parallel
Strand 7
B
403 405parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
166 167first strand
Strand 2
B
221 223anti-parallel
Strand 3
B
190 192anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
204 209first strand
Strand 2
B
194 199anti-parallel
Strand 3
B
321 325parallel
Strand 4
B
332 336anti-parallel
Strand 5
B
341 348anti-parallel
Strand 6
B
301 312anti-parallel
Strand 7
B
386 392anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il