Analysis of interatomic Contacts of Structural Units in PDB entry:
6C70


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C70 entry

There are 4 chains in PDB entry 6C70 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3LYS 474
B
 PHE 3LYS 474
C
 PHE 3LYS 474
D
 PHE 3LYS 474
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 72 helices in PDB entry 6C70. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 11Right-handed 310
Helix 2
AA2
A
12 23Right-handed alpha
Helix 3
AA3
A
31 33Right-handed 310
Helix 4
AA4
A
34 63Right-handed alpha
Helix 5
AA5
A
66 80Right-handed alpha
Helix 6
AA6
A
81 93Right-handed alpha
Helix 7
AA7
A
94 102Right-handed alpha
Helix 8
AA8
A
113 115Right-handed 310
Helix 9
AA9
A
116 151Right-handed alpha
Helix 10
AB1
A
188 190Right-handed 310
Helix 11
AB2
A
191 233Right-handed alpha
Helix 12
AB3
A
233 239Right-handed alpha
Helix 13
AB4
A
315 347Right-handed alpha
Helix 14
AB5
A
347 371Right-handed alpha
Helix 15
AB6
A
378 416Right-handed alpha
Helix 16
AB7
A
418 422Right-handed 310
Helix 17
AB8
A
423 437Right-handed alpha
Helix 18
AB9
A
452 471Right-handed alpha
Helix 19
AC1
B
7 11Right-handed 310
Helix 20
AC2
B
12 23Right-handed alpha
Helix 21
AC3
B
31 33Right-handed 310
Helix 22
AC4
B
34 63Right-handed alpha
Helix 23
AC5
B
66 80Right-handed alpha
Helix 24
AC6
B
81 93Right-handed alpha
Helix 25
AC7
B
94 102Right-handed alpha
Helix 26
AC8
B
113 115Right-handed 310
Helix 27
AC9
B
116 151Right-handed alpha
Helix 28
AD1
B
188 190Right-handed 310
Helix 29
AD2
B
191 233Right-handed alpha
Helix 30
AD3
B
233 239Right-handed alpha
Helix 31
AD4
B
315 347Right-handed alpha
Helix 32
AD5
B
347 371Right-handed alpha
Helix 33
AD6
B
378 416Right-handed alpha
Helix 34
AD7
B
418 422Right-handed 310
Helix 35
AD8
B
423 437Right-handed alpha
Helix 36
AD9
B
452 471Right-handed alpha
Helix 37
AE1
C
7 11Right-handed 310
Helix 38
AE2
C
12 23Right-handed alpha
Helix 39
AE3
C
31 33Right-handed 310
Helix 40
AE4
C
34 63Right-handed alpha
Helix 41
AE5
C
66 80Right-handed alpha
Helix 42
AE6
C
81 93Right-handed alpha
Helix 43
AE7
C
94 102Right-handed alpha
Helix 44
AE8
C
113 115Right-handed 310
Helix 45
AE9
C
116 151Right-handed alpha
Helix 46
AF1
C
188 190Right-handed 310
Helix 47
AF2
C
191 233Right-handed alpha
Helix 48
AF3
C
233 239Right-handed alpha
Helix 49
AF4
C
315 347Right-handed alpha
Helix 50
AF5
C
347 371Right-handed alpha
Helix 51
AF6
C
378 416Right-handed alpha
Helix 52
AF7
C
418 422Right-handed 310
Helix 53
AF8
C
423 437Right-handed alpha
Helix 54
AF9
C
452 471Right-handed alpha
Helix 55
AG1
D
7 11Right-handed 310
Helix 56
AG2
D
12 23Right-handed alpha
Helix 57
AG3
D
31 33Right-handed 310
Helix 58
AG4
D
34 63Right-handed alpha
Helix 59
AG5
D
66 80Right-handed alpha
Helix 60
AG6
D
81 93Right-handed alpha
Helix 61
AG7
D
94 102Right-handed alpha
Helix 62
AG8
D
113 115Right-handed 310
Helix 63
AG9
D
116 151Right-handed alpha
Helix 64
AH1
D
188 190Right-handed 310
Helix 65
AH2
D
191 233Right-handed alpha
Helix 66
AH3
D
233 239Right-handed alpha
Helix 67
AH4
D
315 347Right-handed alpha
Helix 68
AH5
D
347 371Right-handed alpha
Helix 69
AH6
D
378 416Right-handed alpha
Helix 70
AH7
D
418 422Right-handed 310
Helix 71
AH8
D
423 437Right-handed alpha
Helix 72
AH9
D
452 471Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6C70. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
449 450anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 445first strand
Strand 2
B
449 450anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
444 445first strand
Strand 2
C
449 450anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
444 445first strand
Strand 2
D
449 450anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il