Analysis of interatomic Contacts of Structural Units in PDB entry:
6C7C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C7C entry

There are 3 chains in PDB entry 6C7C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 231
B
 GLY 3GLY 230
C
 MET 1GLY 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 6C7C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 45Right-handed alpha
Helix 2
AA2
A
63 69Right-handed alpha
Helix 3
AA3
A
71 91Right-handed alpha
Helix 4
AA4
A
106 113Right-handed alpha
Helix 5
AA5
A
129 134Right-handed 310
Helix 6
AA6
A
138 149Right-handed alpha
Helix 7
AA7
A
150 160Right-handed alpha
Helix 8
AA8
A
165 172Right-handed alpha
Helix 9
AA9
A
180 182Right-handed 310
Helix 10
AB1
A
183 196Right-handed alpha
Helix 11
AB2
A
199 224Right-handed alpha
Helix 12
AB3
A
224 229Right-handed alpha
Helix 13
AB4
B
27 45Right-handed alpha
Helix 14
AB5
B
63 69Right-handed alpha
Helix 15
AB6
B
71 91Right-handed alpha
Helix 16
AB7
B
106 113Right-handed alpha
Helix 17
AB8
B
130 134Right-handed 310
Helix 18
AB9
B
138 149Right-handed alpha
Helix 19
AC1
B
150 160Right-handed alpha
Helix 20
AC2
B
165 172Right-handed alpha
Helix 21
AC3
B
180 182Right-handed 310
Helix 22
AC4
B
183 197Right-handed alpha
Helix 23
AC5
B
199 224Right-handed alpha
Helix 24
AC6
B
225 230Right-handed 310
Helix 25
AC7
C
27 45Right-handed alpha
Helix 26
AC8
C
63 69Right-handed alpha
Helix 27
AC9
C
71 91Right-handed alpha
Helix 28
AD1
C
106 113Right-handed alpha
Helix 29
AD2
C
130 134Right-handed 310
Helix 30
AD3
C
138 149Right-handed alpha
Helix 31
AD4
C
150 160Right-handed alpha
Helix 32
AD5
C
165 173Right-handed alpha
Helix 33
AD6
C
180 182Right-handed 310
Helix 34
AD7
C
183 197Right-handed alpha
Helix 35
AD8
C
199 210Right-handed alpha
Helix 36
AD9
C
211 224Right-handed alpha
Helix 37
AE1
C
224 230Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6C7C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
13 18anti-parallel
Strand 3
A
48 52parallel
Strand 4
A
96 99parallel
Strand 5
A
117 120parallel
Strand 6
A
177 178parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
103 105parallel
Strand 3
A
126 127parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
13 18anti-parallel
Strand 3
B
48 52parallel
Strand 4
B
96 99parallel
Strand 5
B
117 120parallel
Strand 6
B
177 178parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
103 105parallel
Strand 3
B
126 127parallel
Strand 4
B
163 164anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 9first strand
Strand 2
C
13 18anti-parallel
Strand 3
C
48 52parallel
Strand 4
C
96 99parallel
Strand 5
C
117 120parallel
Strand 6
C
177 178parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
103 105parallel
Strand 3
C
126 127parallel
Strand 4
C
163 164anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il