Analysis of interatomic Contacts of Structural Units in PDB entry:
6C7Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C7Y entry

There are 3 chains in PDB entry 6C7Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 868TYR 1034
A
 THR 1036LEU 1153
B
 SER 52LYS 168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 6C7Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
871 875Right-handed 310
Helix 2
AA2
A
919 932Right-handed alpha
Helix 3
AA3
A
963 968Right-handed alpha
Helix 4
AA4
A
976 997Right-handed alpha
Helix 5
AA5
A
1005 1007Right-handed 310
Helix 6
AA6
A
1044 1048Right-handed 310
Helix 7
AA7
A
1049 1056Right-handed alpha
Helix 8
AA8
A
1059 1076Right-handed alpha
Helix 9
AA9
A
1083 1093Right-handed alpha
Helix 10
AB1
A
1098 1110Right-handed alpha
Helix 11
AB2
A
1121 1131Right-handed alpha
Helix 12
AB3
A
1135 1139Right-handed 310
Helix 13
AB4
A
1141 1151Right-handed alpha
Helix 14
AB5
B
60 77Right-handed alpha
Helix 15
AB6
B
85 94Right-handed alpha
Helix 16
AB7
B
146 155Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6C7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
879 883first strand
Strand 2
A
888 894anti-parallel
Strand 3
A
903 909anti-parallel
Strand 4
A
953 957anti-parallel
Strand 5
A
940 944anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
999 1000first strand
Strand 2
A
1026 1027anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1009 1011first strand
Strand 2
A
1017 1019anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1035 1036first strand
Strand 2
A
1057 1058anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
122 131anti-parallel
Strand 3
B
113 119anti-parallel
Strand 4
B
100 105anti-parallel
Strand 5
B
164 165parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il