Analysis of interatomic Contacts of Structural Units in PDB entry:
6C80


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C80 entry

There are 2 chains in PDB entry 6C80 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 44LYS 528
B
 SER 44ALA 532
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6C80. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
78 92Right-handed alpha
Helix 2
AA2
A
121 124Right-handed 310
Helix 3
AA3
A
147 160Right-handed alpha
Helix 4
AA4
A
173 179Right-handed alpha
Helix 5
AA5
A
186 191Right-handed alpha
Helix 6
AA6
A
192 196Right-handed 310
Helix 7
AA7
A
217 225Right-handed alpha
Helix 8
AA8
A
257 270Right-handed alpha
Helix 9
AA9
A
271 276Right-handed 310
Helix 10
AB1
A
294 298Right-handed 310
Helix 11
AB2
A
329 341Right-handed alpha
Helix 12
AB3
A
358 363Right-handed alpha
Helix 13
AB4
A
365 375Right-handed alpha
Helix 14
AB5
A
391 401Right-handed alpha
Helix 15
AB6
A
422 424Right-handed 310
Helix 16
AB7
A
457 475Right-handed alpha
Helix 17
AB8
A
488 497Right-handed alpha
Helix 18
AB9
A
499 511Right-handed alpha
Helix 19
AC1
A
517 521Right-handed 310
Helix 20
AC2
B
78 92Right-handed alpha
Helix 21
AC3
B
121 124Right-handed 310
Helix 22
AC4
B
147 160Right-handed alpha
Helix 23
AC5
B
173 179Right-handed alpha
Helix 24
AC6
B
186 191Right-handed alpha
Helix 25
AC7
B
192 196Right-handed 310
Helix 26
AC8
B
217 225Right-handed alpha
Helix 27
AC9
B
257 270Right-handed alpha
Helix 28
AD1
B
271 276Right-handed 310
Helix 29
AD2
B
294 298Right-handed 310
Helix 30
AD3
B
329 341Right-handed alpha
Helix 31
AD4
B
358 363Right-handed alpha
Helix 32
AD5
B
365 375Right-handed alpha
Helix 33
AD6
B
391 401Right-handed alpha
Helix 34
AD7
B
422 424Right-handed 310
Helix 35
AD8
B
457 475Right-handed alpha
Helix 36
AD9
B
488 497Right-handed alpha
Helix 37
AE1
B
499 511Right-handed alpha
Helix 38
AE2
B
517 521Right-handed 310
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There are 8 sheets in PDB entry 6C80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
116 119parallel
Strand 3
A
97 100parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
138 143anti-parallel
Strand 3
A
232 243anti-parallel
Strand 4
A
161 162anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
138 143anti-parallel
Strand 3
A
232 243anti-parallel
Strand 4
A
199 204anti-parallel
Strand 5
A
209 212anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 357first strand
Strand 2
A
247 255anti-parallel
Strand 3
A
314 324anti-parallel
Strand 4
A
279 286anti-parallel
Strand 5
A
414 420anti-parallel
Strand 6
A
439 445anti-parallel
Strand 7
A
385 390anti-parallel
Strand 8
A
479 481anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
116 119parallel
Strand 3
B
97 100parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
138 143anti-parallel
Strand 3
B
232 243anti-parallel
Strand 4
B
161 162anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
138 143anti-parallel
Strand 3
B
232 243anti-parallel
Strand 4
B
199 204anti-parallel
Strand 5
B
209 212anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 357first strand
Strand 2
B
247 255anti-parallel
Strand 3
B
314 324anti-parallel
Strand 4
B
279 286anti-parallel
Strand 5
B
414 420anti-parallel
Strand 6
B
439 445anti-parallel
Strand 7
B
385 390anti-parallel
Strand 8
B
479 481anti-parallel
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