Analysis of interatomic Contacts of Structural Units in PDB entry:
6C84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C84 entry

There are 2 chains in PDB entry 6C84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 39	GLN 678
B	GLU 38	GLN 678

There are 56 helices in PDB entry 6C84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	58	Right-handed alpha
Helix 2	AA2	A	60	65	Right-handed alpha
Helix 3	AA3	A	88	93	Right-handed alpha
Helix 4	AA4	A	150	154	Right-handed 310
Helix 5	AA5	A	197	201	Right-handed 310
Helix 6	AA6	A	203	217	Right-handed alpha
Helix 7	AA7	A	220	229	Right-handed alpha
Helix 8	AA8	A	267	270	Right-handed 310
Helix 9	AA9	A	271	276	Right-handed alpha
Helix 10	AB1	A	282	289	Right-handed alpha
Helix 11	AB2	A	301	307	Right-handed alpha
Helix 12	AB3	A	307	312	Right-handed alpha
Helix 13	AB4	A	348	359	Right-handed alpha
Helix 14	AB5	A	386	392	Right-handed alpha
Helix 15	AB6	A	395	405	Right-handed alpha
Helix 16	AB7	A	412	416	Right-handed 310
Helix 17	AB8	A	420	423	Right-handed 310
Helix 18	AB9	A	424	435	Right-handed alpha
Helix 19	AC1	A	454	458	Right-handed 310
Helix 20	AC2	A	472	480	Right-handed alpha
Helix 21	AC3	A	481	491	Right-handed alpha
Helix 22	AC4	A	493	502	Right-handed alpha
Helix 23	AC5	A	529	538	Right-handed alpha
Helix 24	AC6	A	546	555	Right-handed alpha
Helix 25	AC7	A	556	559	Right-handed 310
Helix 26	AC8	A	582	599	Right-handed alpha
Helix 27	AC9	A	604	611	Right-handed 310
Helix 28	AD1	A	661	666	Right-handed alpha
Helix 29	AD2	A	666	677	Right-handed alpha
Helix 30	AD3	B	40	59	Right-handed alpha
Helix 31	AD4	B	60	65	Right-handed alpha
Helix 32	AD5	B	83	88	Right-handed alpha
Helix 33	AD6	B	202	217	Right-handed alpha
Helix 34	AD7	B	221	229	Right-handed alpha
Helix 35	AD8	B	267	270	Right-handed 310
Helix 36	AD9	B	271	276	Right-handed alpha
Helix 37	AE1	B	282	289	Right-handed alpha
Helix 38	AE2	B	301	307	Right-handed alpha
Helix 39	AE3	B	307	312	Right-handed alpha
Helix 40	AE4	B	348	359	Right-handed alpha
Helix 41	AE5	B	386	392	Right-handed alpha
Helix 42	AE6	B	395	402	Right-handed alpha
Helix 43	AE7	B	412	416	Right-handed 310
Helix 44	AE8	B	420	423	Right-handed 310
Helix 45	AE9	B	424	435	Right-handed alpha
Helix 46	AF1	B	454	458	Right-handed 310
Helix 47	AF2	B	472	479	Right-handed alpha
Helix 48	AF3	B	481	492	Right-handed alpha
Helix 49	AF4	B	493	502	Right-handed alpha
Helix 50	AF5	B	529	538	Right-handed alpha
Helix 51	AF6	B	546	555	Right-handed alpha
Helix 52	AF7	B	556	559	Right-handed 310
Helix 53	AF8	B	582	599	Right-handed alpha
Helix 54	AF9	B	604	611	Right-handed 310
Helix 55	AG1	B	661	666	Right-handed alpha
Helix 56	AG2	B	666	677	Right-handed alpha

There are 20 sheets in PDB entry 6C84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	100	first strand
Strand 2	A	118	124	anti-parallel
Strand 3	A	127	134	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	114	115	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	A	147	148	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	244	first strand
Strand 2	A	183	195	anti-parallel
Strand 3	A	255	264	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	244	first strand
Strand 2	A	183	195	anti-parallel
Strand 3	A	176	177	anti-parallel
Strand 4	A	343	344	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	280	first strand
Strand 2	A	297	299	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	338	339	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	382	first strand
Strand 2	A	364	369	anti-parallel
Strand 3	A	648	653	anti-parallel
Strand 4	A	632	640	anti-parallel
Strand 5	A	615	623	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	445	first strand
Strand 2	A	470	471	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	451	first strand
Strand 2	A	462	463	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	576	577	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	107	first strand
Strand 2	B	115	124	anti-parallel
Strand 3	B	127	140	anti-parallel
Strand 4	B	145	148	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	169	first strand
Strand 2	B	316	322	anti-parallel
Strand 3	B	328	335	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	243	first strand
Strand 2	B	183	195	anti-parallel
Strand 3	B	255	264	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	243	first strand
Strand 2	B	183	195	anti-parallel
Strand 3	B	176	177	anti-parallel
Strand 4	B	343	344	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	280	first strand
Strand 2	B	297	299	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	382	first strand
Strand 2	B	364	369	anti-parallel
Strand 3	B	648	651	anti-parallel
Strand 4	B	633	640	anti-parallel
Strand 5	B	615	622	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	445	first strand
Strand 2	B	470	471	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	451	first strand
Strand 2	B	462	463	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	576	577	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C84

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C84