Analysis of interatomic Contacts of Structural Units in PDB entry:
6C85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C85 entry

There are 2 chains in PDB entry 6C85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5ILE 362
B
 SER 5ILE 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6C85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 28Right-handed alpha
Helix 2
AA2
A
61 66Right-handed alpha
Helix 3
AA3
A
73 78Right-handed 310
Helix 4
AA4
A
93 102Right-handed alpha
Helix 5
AA5
A
127 132Right-handed 310
Helix 6
AA6
A
133 142Right-handed alpha
Helix 7
AA7
A
153 155Right-handed 310
Helix 8
AA8
A
156 171Right-handed alpha
Helix 9
AA9
A
193 198Right-handed alpha
Helix 10
AB1
A
207 220Right-handed alpha
Helix 11
AB2
A
266 277Right-handed alpha
Helix 12
AB3
A
279 284Right-handed alpha
Helix 13
AB4
A
304 309Right-handed alpha
Helix 14
AB5
A
310 315Right-handed 310
Helix 15
AB6
A
345 359Right-handed alpha
Helix 16
AB7
B
16 29Right-handed alpha
Helix 17
AB8
B
40 44Right-handed 310
Helix 18
AB9
B
47 51Right-handed 310
Helix 19
AC1
B
61 66Right-handed alpha
Helix 20
AC2
B
73 78Right-handed 310
Helix 21
AC3
B
93 102Right-handed alpha
Helix 22
AC4
B
127 132Right-handed 310
Helix 23
AC5
B
133 142Right-handed alpha
Helix 24
AC6
B
153 155Right-handed 310
Helix 25
AC7
B
156 171Right-handed alpha
Helix 26
AC8
B
193 198Right-handed alpha
Helix 27
AC9
B
207 220Right-handed alpha
Helix 28
AD1
B
266 277Right-handed alpha
Helix 29
AD2
B
279 284Right-handed alpha
Helix 30
AD3
B
304 309Right-handed alpha
Helix 31
AD4
B
310 315Right-handed 310
Helix 32
AD5
B
345 359Right-handed alpha
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There are 6 sheets in PDB entry 6C85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
32 39parallel
Strand 3
A
7 12parallel
Strand 4
A
82 85parallel
Strand 5
A
105 108parallel
Strand 6
A
147 150parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 244first strand
Strand 2
A
173 182parallel
Strand 3
A
251 259anti-parallel
Strand 4
A
332 338anti-parallel
Strand 5
A
317 324anti-parallel
Strand 6
A
294 297parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
230 231anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
32 39parallel
Strand 3
B
7 12parallel
Strand 4
B
82 85parallel
Strand 5
B
105 108parallel
Strand 6
B
147 150parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 241first strand
Strand 2
B
173 181parallel
Strand 3
B
251 259anti-parallel
Strand 4
B
332 338anti-parallel
Strand 5
B
317 324anti-parallel
Strand 6
B
294 297parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 223first strand
Strand 2
B
230 231anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il