Analysis of interatomic Contacts of Structural Units in PDB entry:
6C87

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C87 entry

There are 3 chains in PDB entry 6C87 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 442
B	MET 1	PRO 441
C	MET 1	PHE 432

There are 84 helices in PDB entry 6C87. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	26	Right-handed alpha
Helix 2	AA2	A	40	43	Right-handed 310
Helix 3	AA3	A	47	57	Right-handed alpha
Helix 4	AA4	A	63	67	Right-handed 310
Helix 5	AA5	A	68	72	Right-handed 310
Helix 6	AA6	A	85	95	Right-handed alpha
Helix 7	AA7	A	96	99	Right-handed 310
Helix 8	AA8	A	123	128	Right-handed alpha
Helix 9	AA9	A	134	150	Right-handed alpha
Helix 10	AB1	A	155	159	Right-handed 310
Helix 11	AB2	A	168	177	Right-handed alpha
Helix 12	AB3	A	179	189	Right-handed alpha
Helix 13	AB4	A	197	202	Right-handed alpha
Helix 14	AB5	A	203	222	Right-handed alpha
Helix 15	AB6	A	234	247	Right-handed alpha
Helix 16	AB7	A	287	292	Right-handed 310
Helix 17	AB8	A	325	329	Right-handed 310
Helix 18	AB9	A	343	345	Right-handed 310
Helix 19	AC1	A	364	369	Right-handed alpha
Helix 20	AC2	A	369	377	Right-handed alpha
Helix 21	AC3	A	413	429	Right-handed alpha
Helix 22	AC4	B	13	26	Right-handed alpha
Helix 23	AC5	B	40	43	Right-handed 310
Helix 24	AC6	B	47	57	Right-handed alpha
Helix 25	AC7	B	63	67	Right-handed 310
Helix 26	AC8	B	68	72	Right-handed 310
Helix 27	AC9	B	85	95	Right-handed alpha
Helix 28	AD1	B	96	99	Right-handed 310
Helix 29	AD2	B	123	130	Right-handed alpha
Helix 30	AD3	B	134	150	Right-handed alpha
Helix 31	AD4	B	155	159	Right-handed 310
Helix 32	AD5	B	168	177	Right-handed alpha
Helix 33	AD6	B	179	189	Right-handed alpha
Helix 34	AD7	B	197	202	Right-handed alpha
Helix 35	AD8	B	203	222	Right-handed alpha
Helix 36	AD9	B	234	247	Right-handed alpha
Helix 37	AE1	B	287	292	Right-handed 310
Helix 38	AE2	B	325	329	Right-handed 310
Helix 39	AE3	B	343	345	Right-handed 310
Helix 40	AE4	B	364	369	Right-handed alpha
Helix 41	AE5	B	369	377	Right-handed alpha
Helix 42	AE6	B	413	429	Right-handed alpha
Helix 43	AE7	C	13	26	Right-handed alpha
Helix 44	AE8	C	40	43	Right-handed 310
Helix 45	AE9	C	47	56	Right-handed alpha
Helix 46	AF1	C	63	67	Right-handed 310
Helix 47	AF2	C	68	72	Right-handed 310
Helix 48	AF3	C	85	95	Right-handed alpha
Helix 49	AF4	C	96	99	Right-handed 310
Helix 50	AF5	C	123	128	Right-handed alpha
Helix 51	AF6	C	134	150	Right-handed alpha
Helix 52	AF7	C	155	159	Right-handed 310
Helix 53	AF8	C	168	177	Right-handed alpha
Helix 54	AF9	C	179	189	Right-handed alpha
Helix 55	AG1	C	197	202	Right-handed alpha
Helix 56	AG2	C	203	222	Right-handed alpha
Helix 57	AG3	C	234	247	Right-handed alpha
Helix 58	AG4	C	287	292	Right-handed 310
Helix 59	AG5	C	325	329	Right-handed 310
Helix 60	AG6	C	343	345	Right-handed 310
Helix 61	AG7	C	364	369	Right-handed alpha
Helix 62	AG8	C	369	377	Right-handed alpha
Helix 63	AG9	C	413	429	Right-handed alpha
Helix 64	AH1	D	13	26	Right-handed alpha
Helix 65	AH2	D	40	43	Right-handed 310
Helix 66	AH3	D	47	57	Right-handed alpha
Helix 67	AH4	D	63	67	Right-handed 310
Helix 68	AH5	D	68	72	Right-handed 310
Helix 69	AH6	D	85	95	Right-handed alpha
Helix 70	AH7	D	96	99	Right-handed 310
Helix 71	AH8	D	123	128	Right-handed alpha
Helix 72	AH9	D	134	150	Right-handed alpha
Helix 73	AI1	D	155	159	Right-handed 310
Helix 74	AI2	D	168	177	Right-handed alpha
Helix 75	AI3	D	179	189	Right-handed alpha
Helix 76	AI4	D	197	202	Right-handed alpha
Helix 77	AI5	D	203	222	Right-handed alpha
Helix 78	AI6	D	234	247	Right-handed alpha
Helix 79	AI7	D	287	292	Right-handed 310
Helix 80	AI8	D	325	329	Right-handed 310
Helix 81	AI9	D	343	345	Right-handed 310
Helix 82	AJ1	D	364	369	Right-handed alpha
Helix 83	AJ2	D	369	377	Right-handed alpha
Helix 84	AJ3	D	413	429	Right-handed alpha

There are 20 sheets in PDB entry 6C87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	30	33	parallel
Strand 3	A	7	10	parallel
Strand 4	A	282	285	parallel
Strand 5	A	401	403	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	74	75	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	226	229	anti-parallel
Strand 3	A	103	105	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	108	113	anti-parallel
Strand 3	A	320	324	parallel
Strand 4	A	335	341	anti-parallel
Strand 5	A	352	359	anti-parallel
Strand 6	A	294	307	anti-parallel
Strand 7	A	381	392	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	262	first strand
Strand 2	A	268	273	anti-parallel
Strand 3	A	276	279	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	252	first strand
Strand 2	B	30	33	parallel
Strand 3	B	4	10	parallel
Strand 4	B	276	285	parallel
Strand 5	B	268	273	anti-parallel
Strand 6	B	259	262	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	252	first strand
Strand 2	B	30	33	parallel
Strand 3	B	4	10	parallel
Strand 4	B	276	285	parallel
Strand 5	B	401	403	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	74	75	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	226	229	anti-parallel
Strand 3	B	103	105	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	119	first strand
Strand 2	B	108	113	anti-parallel
Strand 3	B	320	324	parallel
Strand 4	B	335	341	anti-parallel
Strand 5	B	352	359	anti-parallel
Strand 6	B	294	307	anti-parallel
Strand 7	B	381	392	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	252	first strand
Strand 2	C	30	33	parallel
Strand 3	C	4	10	parallel
Strand 4	C	276	285	parallel
Strand 5	C	268	273	anti-parallel
Strand 6	C	259	262	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	252	first strand
Strand 2	C	30	33	parallel
Strand 3	C	4	10	parallel
Strand 4	C	276	285	parallel
Strand 5	C	401	403	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	74	75	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	82	first strand
Strand 2	C	226	229	anti-parallel
Strand 3	C	103	105	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	108	113	anti-parallel
Strand 3	C	320	324	parallel
Strand 4	C	335	341	anti-parallel
Strand 5	C	352	359	anti-parallel
Strand 6	C	294	307	anti-parallel
Strand 7	C	381	392	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	252	first strand
Strand 2	D	30	33	parallel
Strand 3	D	4	10	parallel
Strand 4	D	276	285	parallel
Strand 5	D	268	273	anti-parallel
Strand 6	D	259	262	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	252	first strand
Strand 2	D	30	33	parallel
Strand 3	D	4	10	parallel
Strand 4	D	276	285	parallel
Strand 5	D	401	403	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	74	75	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	82	first strand
Strand 2	D	226	229	anti-parallel
Strand 3	D	103	105	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	119	first strand
Strand 2	D	108	113	anti-parallel
Strand 3	D	320	324	parallel
Strand 4	D	335	341	anti-parallel
Strand 5	D	352	359	anti-parallel
Strand 6	D	294	307	anti-parallel
Strand 7	D	381	392	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C87

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C87