Analysis of interatomic Contacts of Structural Units in PDB entry:
6C8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C8R entry

There are 2 chains in PDB entry 6C8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 17HIS 374
B
 ALA 16ASN 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6C8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 34Right-handed 310
Helix 2
AA2
A
35 57Right-handed alpha
Helix 3
AA3
A
62 66Right-handed 310
Helix 4
AA4
A
82 101Right-handed alpha
Helix 5
AA5
A
119 126Right-handed alpha
Helix 6
AA6
A
168 173Right-handed 310
Helix 7
AA7
A
190 215Right-handed alpha
Helix 8
AA8
A
235 238Right-handed 310
Helix 9
AA9
A
239 258Right-handed alpha
Helix 10
AB1
A
262 268Right-handed alpha
Helix 11
AB2
A
277 289Right-handed alpha
Helix 12
AB3
A
309 330Right-handed alpha
Helix 13
AB4
A
333 348Right-handed alpha
Helix 14
AB5
A
348 355Right-handed alpha
Helix 15
AB6
B
35 57Right-handed alpha
Helix 16
AB7
B
62 66Right-handed 310
Helix 17
AB8
B
82 101Right-handed alpha
Helix 18
AB9
B
119 126Right-handed alpha
Helix 19
AC1
B
168 173Right-handed 310
Helix 20
AC2
B
190 215Right-handed alpha
Helix 21
AC3
B
235 238Right-handed 310
Helix 22
AC4
B
239 258Right-handed alpha
Helix 23
AC5
B
262 268Right-handed alpha
Helix 24
AC6
B
277 289Right-handed alpha
Helix 25
AC7
B
309 330Right-handed alpha
Helix 26
AC8
B
333 348Right-handed alpha
Helix 27
AC9
B
348 355Right-handed alpha
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There are 2 sheets in PDB entry 6C8R. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 139first strand
Strand 2
A
108 114parallel
Strand 3
A
71 76parallel
Strand 4
A
152 158parallel
Strand 5
A
216 227parallel
Strand 6
A
361 368anti-parallel
Strand 7
A
291 298anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 139first strand
Strand 2
B
108 114parallel
Strand 3
B
71 76parallel
Strand 4
B
152 158parallel
Strand 5
B
216 227parallel
Strand 6
B
361 368anti-parallel
Strand 7
B
291 298anti-parallel
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