Analysis of interatomic Contacts of Structural Units in PDB entry:
6C8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C8V entry

There is 1 chain in PDB entry 6C8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 13LEU 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6C8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 64Right-handed alpha
Helix 2
AA2
A
74 78Right-handed 310
Helix 3
AA3
A
80 91Right-handed alpha
Helix 4
AA4
A
102 106Right-handed 310
Helix 5
AA5
A
108 115Right-handed alpha
Helix 6
AA6
A
142 155Right-handed alpha
Helix 7
AA7
A
169 171Right-handed 310
Helix 8
AA8
A
172 184Right-handed alpha
Helix 9
AA9
A
209 227Right-handed alpha
Helix 10
AB1
A
247 251Right-handed 310
Helix 11
AB2
A
270 274Right-handed 310
Helix 12
AB3
A
286 294Right-handed alpha
Helix 13
AB4
A
294 300Right-handed alpha
Helix 14
AB5
A
309 318Right-handed 310
Helix 15
AB6
A
323 332Right-handed alpha
Helix 16
AB7
A
346 353Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6C8V.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 236first strand
Strand 2
A
187 191parallel
Strand 3
A
159 164parallel
Strand 4
A
119 123parallel
Strand 5
A
94 99parallel
Strand 6
A
67 71parallel
Strand 7
A
19 23parallel
Strand 8
A
256 259parallel
Strand 9
A
264 266anti-parallel
Strand 10
A
280 281anti-parallel
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