Analysis of interatomic Contacts of Structural Units in PDB entry:
6C8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C8Z entry

There is 1 chain in PDB entry 6C8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6C8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 21Right-handed alpha
Helix 2
AA2
A
22 24Right-handed 310
Helix 3
AA3
A
42 51Right-handed alpha
Helix 4
AA4
A
54 64Right-handed alpha
Helix 5
AA5
A
71 85Right-handed alpha
Helix 6
AA6
A
96 106Right-handed alpha
Helix 7
AA7
A
115 127Right-handed alpha
Helix 8
AA8
A
140 146Right-handed alpha
Helix 9
AA9
A
167 171Right-handed 310
Helix 10
AB1
A
221 227Right-handed alpha
Helix 11
AB2
A
227 234Right-handed alpha
Helix 12
AB3
A
242 246Right-handed 310
Helix 13
AB4
A
255 274Right-handed alpha
Helix 14
AB5
A
288 298Right-handed alpha
Helix 15
AB6
A
299 304Right-handed alpha
Helix 16
AB7
A
311 321Right-handed alpha
Helix 17
AB8
A
323 332Right-handed alpha
Helix 18
AB9
A
336 352Right-handed alpha
Helix 19
AC1
A
376 398Right-handed alpha
Helix 20
AC2
A
404 412Right-handed 310
Helix 21
AC3
A
415 432Right-handed alpha
Helix 22
AC4
A
436 443Right-handed alpha
Helix 23
AC5
A
468 485Right-handed alpha
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There are 3 sheets in PDB entry 6C8Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 166first strand
Strand 2
A
153 158anti-parallel
Strand 3
A
132 135parallel
Strand 4
A
27 30parallel
Strand 5
A
237 240parallel
Strand 6
A
278 282parallel
Strand 7
A
306 310parallel
Strand 8
A
356 360parallel
Strand 9
A
364 370anti-parallel
Strand 10
A
450 456anti-parallel
Strand 11
A
444 447anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 93first strand
Strand 2
A
205 211parallel
Strand 3
A
180 186anti-parallel
Strand 4
A
34 40parallel
Strand 5
A
110 114anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 194first strand
Strand 2
A
197 200anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il