Analysis of interatomic Contacts of Structural Units in PDB entry:
6C93


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C93 entry

There is 1 chain in PDB entry 6C93 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 21LEU 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6C93. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 38Right-handed alpha
Helix 2
AA2
A
52 57Right-handed alpha
Helix 3
AA3
A
60 72Right-handed alpha
Helix 4
AA4
A
91 100Right-handed alpha
Helix 5
AA5
A
106 111Right-handed alpha
Helix 6
AA6
A
112 114Right-handed 310
Helix 7
AA7
A
125 137Right-handed alpha
Helix 8
AA8
A
138 140Right-handed 310
Helix 9
AA9
A
141 146Right-handed alpha
Helix 10
AB1
A
147 168Right-handed alpha
Helix 11
AB2
A
175 192Right-handed alpha
Helix 12
AB3
A
200 223Right-handed alpha
Helix 13
AB4
A
224 227Right-handed 310
Helix 14
AB5
A
228 233Right-handed alpha
Helix 15
AB6
A
235 263Right-handed alpha
Helix 16
AB7
A
265 273Right-handed alpha
Helix 17
AB8
A
279 285Right-handed alpha
Helix 18
AB9
A
286 290Right-handed 310
Helix 19
AC1
A
296 329Right-handed alpha
Helix 20
AC2
A
329 345Right-handed alpha
Helix 21
AC3
A
351 357Right-handed 310
Helix 22
AC4
A
358 372Right-handed alpha
Helix 23
AC5
A
404 409Right-handed alpha
Helix 24
AC6
A
421 425Right-handed 310
Helix 25
AC7
A
426 431Right-handed alpha
Helix 26
AC8
A
450 468Right-handed alpha
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There are 4 sheets in PDB entry 6C93. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
85 89anti-parallel
Strand 3
A
399 403parallel
Strand 4
A
377 381anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
494 499anti-parallel
Strand 3
A
469 473anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
393 394anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 483first strand
Strand 2
A
487 489anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il