Analysis of interatomic Contacts of Structural Units in PDB entry:
6C98

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C98 entry

There are 4 chains in PDB entry 6C98 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 4	LEU 267
B	ILE 1	MET 99
C	HIS 4	LEU 267
D	ILE 1	MET 99

There are 16 helices in PDB entry 6C98. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	54	Right-handed 310
Helix 2	AA2	A	59	82	Right-handed alpha
Helix 3	AA3	A	100	102	Right-handed 310
Helix 4	AA4	A	131	144	Right-handed alpha
Helix 5	AA5	A	146	157	Right-handed alpha
Helix 6	AA6	A	157	170	Right-handed alpha
Helix 7	AA7	A	170	175	Right-handed alpha
Helix 8	AA8	A	246	248	Right-handed 310
Helix 9	AA9	C	49	54	Right-handed 310
Helix 10	AB1	C	59	82	Right-handed alpha
Helix 11	AB2	C	100	102	Right-handed 310
Helix 12	AB3	C	131	144	Right-handed alpha
Helix 13	AB4	C	146	157	Right-handed alpha
Helix 14	AB5	C	157	170	Right-handed alpha
Helix 15	AB6	C	170	175	Right-handed alpha
Helix 16	AB7	C	246	248	Right-handed 310

There are 12 sheets in PDB entry 6C98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	33	39	anti-parallel
Strand 3	A	24	30	anti-parallel
Strand 4	A	6	14	anti-parallel
Strand 5	A	89	98	anti-parallel
Strand 6	A	104	112	anti-parallel
Strand 7	A	115	121	anti-parallel
Strand 8	A	126	128	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	188	first strand
Strand 2	A	193	203	anti-parallel
Strand 3	A	234	243	anti-parallel
Strand 4	A	223	228	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	220	first strand
Strand 2	A	208	214	anti-parallel
Strand 3	A	250	256	anti-parallel
Strand 4	A	263	265	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	33	39	anti-parallel
Strand 3	C	24	30	anti-parallel
Strand 4	C	6	14	anti-parallel
Strand 5	C	89	98	anti-parallel
Strand 6	C	104	112	anti-parallel
Strand 7	C	115	121	anti-parallel
Strand 8	C	126	128	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	188	first strand
Strand 2	C	193	203	anti-parallel
Strand 3	C	234	243	anti-parallel
Strand 4	C	223	228	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	220	first strand
Strand 2	C	208	214	anti-parallel
Strand 3	C	250	256	anti-parallel
Strand 4	C	263	265	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	21	30	anti-parallel
Strand 3	D	62	70	anti-parallel
Strand 4	D	50	51	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	21	30	anti-parallel
Strand 3	D	62	70	anti-parallel
Strand 4	D	55	56	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	36	41	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	91	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C98

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C98