Analysis of interatomic Contacts of Structural Units in PDB entry:
6C9A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C9A entry

There are 2 chains in PDB entry 6C9A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 HIS 66ARG 795
A
 HIS 66ARG 795
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 76 helices in PDB entry 6C9A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
67 84Right-handed alpha
Helix 2
AA2
B
87 91Right-handed 310
Helix 3
AA3
B
94 105Right-handed alpha
Helix 4
AA4
B
107 124Right-handed alpha
Helix 5
AA5
B
137 163Right-handed alpha
Helix 6
AA6
B
164 170Right-handed alpha
Helix 7
AA7
B
171 195Right-handed alpha
Helix 8
AA8
B
201 206Right-handed 310
Helix 9
AA9
B
207 212Right-handed alpha
Helix 10
AB1
B
216 229Right-handed alpha
Helix 11
AB2
B
230 256Right-handed alpha
Helix 12
AB3
B
266 279Right-handed alpha
Helix 13
AB4
B
282 292Right-handed alpha
Helix 14
AB5
B
294 296Right-handed 310
Helix 15
AB6
B
297 309Right-handed alpha
Helix 16
AB7
B
309 350Right-handed alpha
Helix 17
AB8
B
360 369Right-handed alpha
Helix 18
AB9
B
376 389Right-handed alpha
Helix 19
AC1
B
396 401Right-handed alpha
Helix 20
AC2
B
428 440Right-handed alpha
Helix 21
AC3
B
443 466Right-handed alpha
Helix 22
AC4
B
468 472Right-handed 310
Helix 23
AC5
B
477 499Right-handed alpha
Helix 24
AC6
B
506 528Right-handed alpha
Helix 25
AC7
B
530 533Right-handed 310
Helix 26
AC8
B
534 539Right-handed alpha
Helix 27
AC9
B
540 550Right-handed 310
Helix 28
AD1
B
551 562Right-handed alpha
Helix 29
AD2
B
564 590Right-handed alpha
Helix 30
AD3
B
625 629Right-handed 310
Helix 31
AD4
B
633 646Right-handed alpha
Helix 32
AD5
B
649 661Right-handed alpha
Helix 33
AD6
B
663 699Right-handed alpha
Helix 34
AD7
B
718 732Right-handed alpha
Helix 35
AD8
B
735 751Right-handed alpha
Helix 36
AD9
B
765 774Right-handed alpha
Helix 37
AE1
B
775 777Right-handed 310
Helix 38
AE2
B
778 794Right-handed alpha
Helix 39
AE3
A
67 84Right-handed alpha
Helix 40
AE4
A
87 91Right-handed 310
Helix 41
AE5
A
94 105Right-handed alpha
Helix 42
AE6
A
107 124Right-handed alpha
Helix 43
AE7
A
137 163Right-handed alpha
Helix 44
AE8
A
164 170Right-handed alpha
Helix 45
AE9
A
171 195Right-handed alpha
Helix 46
AF1
A
201 206Right-handed 310
Helix 47
AF2
A
207 212Right-handed alpha
Helix 48
AF3
A
216 229Right-handed alpha
Helix 49
AF4
A
230 256Right-handed alpha
Helix 50
AF5
A
266 279Right-handed alpha
Helix 51
AF6
A
282 292Right-handed alpha
Helix 52
AF7
A
294 296Right-handed 310
Helix 53
AF8
A
297 309Right-handed alpha
Helix 54
AF9
A
309 350Right-handed alpha
Helix 55
AG1
A
360 369Right-handed alpha
Helix 56
AG2
A
376 389Right-handed alpha
Helix 57
AG3
A
396 401Right-handed alpha
Helix 58
AG4
A
428 440Right-handed alpha
Helix 59
AG5
A
443 466Right-handed alpha
Helix 60
AG6
A
468 472Right-handed 310
Helix 61
AG7
A
477 499Right-handed alpha
Helix 62
AG8
A
506 528Right-handed alpha
Helix 63
AG9
A
530 533Right-handed 310
Helix 64
AH1
A
534 539Right-handed alpha
Helix 65
AH2
A
540 550Right-handed 310
Helix 66
AH3
A
551 562Right-handed alpha
Helix 67
AH4
A
564 590Right-handed alpha
Helix 68
AH5
A
625 629Right-handed 310
Helix 69
AH6
A
633 646Right-handed alpha
Helix 70
AH7
A
649 661Right-handed alpha
Helix 71
AH8
A
663 699Right-handed alpha
Helix 72
AH9
A
718 732Right-handed alpha
Helix 73
AI1
A
735 751Right-handed alpha
Helix 74
AI2
A
765 774Right-handed alpha
Helix 75
AI3
A
775 777Right-handed 310
Helix 76
AI4
A
778 794Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6C9A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
410 412first strand
Strand 2
B
756 762anti-parallel
Strand 3
B
710 716anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
610 611first strand
Strand 2
B
622 623anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 412first strand
Strand 2
A
756 762anti-parallel
Strand 3
A
710 716anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 611first strand
Strand 2
A
622 623anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il