Analysis of interatomic Contacts of Structural Units in PDB entry:
6C9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C9D entry

There are 2 chains in PDB entry 6C9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 53LEU 795
B
 GLU 53LEU 795
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6C9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
94 96Right-handed 310
Helix 2
AA2
A
97 112Right-handed alpha
Helix 3
AA3
A
145 152Right-handed alpha
Helix 4
AA4
A
155 176Right-handed alpha
Helix 5
AA5
A
184 186Right-handed 310
Helix 6
AA6
A
200 204Right-handed 310
Helix 7
AA7
A
219 223Right-handed 310
Helix 8
AA8
A
224 229Right-handed alpha
Helix 9
AA9
A
235 253Right-handed alpha
Helix 10
AB1
A
261 272Right-handed alpha
Helix 11
AB2
A
281 292Right-handed alpha
Helix 12
AB3
A
301 306Right-handed alpha
Helix 13
AB4
A
308 313Right-handed alpha
Helix 14
AB5
A
332 342Right-handed alpha
Helix 15
AB6
A
345 356Right-handed alpha
Helix 16
AB7
A
359 369Right-handed alpha
Helix 17
AB8
A
713 728Right-handed alpha
Helix 18
AB9
A
746 750Right-handed 310
Helix 19
AC1
A
778 793Right-handed alpha
Helix 20
AC2
B
94 96Right-handed 310
Helix 21
AC3
B
97 112Right-handed alpha
Helix 22
AC4
B
145 152Right-handed alpha
Helix 23
AC5
B
155 176Right-handed alpha
Helix 24
AC6
B
184 186Right-handed 310
Helix 25
AC7
B
200 204Right-handed 310
Helix 26
AC8
B
219 223Right-handed 310
Helix 27
AC9
B
226 230Right-handed 310
Helix 28
AD1
B
236 253Right-handed alpha
Helix 29
AD2
B
261 272Right-handed alpha
Helix 30
AD3
B
281 292Right-handed alpha
Helix 31
AD4
B
301 306Right-handed alpha
Helix 32
AD5
B
307 308Right-handed 310
Helix 33
AD6
B
309 313Right-handed 310
Helix 34
AD7
B
332 341Right-handed alpha
Helix 35
AD8
B
345 356Right-handed alpha
Helix 36
AD9
B
359 369Right-handed alpha
Helix 37
AE1
B
713 728Right-handed alpha
Helix 38
AE2
B
746 750Right-handed 310
Helix 39
AE3
B
778 793Right-handed alpha
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There are 9 sheets in PDB entry 6C9D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
60 68anti-parallel
Strand 3
A
72 79anti-parallel
Strand 4
A
85 92anti-parallel
Strand 5
A
131 136anti-parallel
Strand 6
A
122 127anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
188 190anti-parallel
Strand 3
A
196 198anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
205 206anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
698 699first strand
Strand 2
A
753 761parallel
Strand 3
A
739 744anti-parallel
Strand 4
A
731 736anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
698 699first strand
Strand 2
A
753 761parallel
Strand 3
A
768 776anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
60 69anti-parallel
Strand 3
B
72 79anti-parallel
Strand 4
B
85 92anti-parallel
Strand 5
B
131 136anti-parallel
Strand 6
B
122 127anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
205 206anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
196 198anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
731 736first strand
Strand 2
B
739 744anti-parallel
Strand 3
B
753 761anti-parallel
Strand 4
B
768 776anti-parallel
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