Analysis of interatomic Contacts of Structural Units in PDB entry:
6C9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C9E entry

There are 4 chains in PDB entry 6C9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10HIS 233
A
 MET 235ALA 414
B
 THR 9HIS 233
B
 MET 235ALA 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6C9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 18Right-handed alpha
Helix 2
AA2
A
19 24Right-handed 310
Helix 3
AA3
A
44 58Right-handed alpha
Helix 4
AA4
A
67 89Right-handed alpha
Helix 5
AA5
A
92 94Right-handed 310
Helix 6
AA6
A
101 113Right-handed alpha
Helix 7
AA7
A
131 134Right-handed 310
Helix 8
AA8
A
135 146Right-handed alpha
Helix 9
AA9
A
161 169Right-handed alpha
Helix 10
AB1
A
190 201Right-handed alpha
Helix 11
AB2
A
211 216Right-handed alpha
Helix 12
AB3
A
219 224Right-handed alpha
Helix 13
AB4
A
233 236Right-handed 310
Helix 14
AB5
A
247 254Right-handed alpha
Helix 15
AB6
A
278 282Right-handed 310
Helix 16
AB7
A
287 305Right-handed alpha
Helix 17
AB8
A
305 328Right-handed alpha
Helix 18
AB9
A
351 362Right-handed alpha
Helix 19
AC1
A
373 380Right-handed alpha
Helix 20
AC2
A
395 413Right-handed alpha
Helix 21
AC3
B
12 18Right-handed alpha
Helix 22
AC4
B
19 24Right-handed 310
Helix 23
AC5
B
44 58Right-handed alpha
Helix 24
AC6
B
67 89Right-handed alpha
Helix 25
AC7
B
92 94Right-handed 310
Helix 26
AC8
B
101 113Right-handed alpha
Helix 27
AC9
B
131 134Right-handed 310
Helix 28
AD1
B
135 146Right-handed alpha
Helix 29
AD2
B
161 169Right-handed alpha
Helix 30
AD3
B
190 201Right-handed alpha
Helix 31
AD4
B
211 215Right-handed 310
Helix 32
AD5
B
219 224Right-handed alpha
Helix 33
AD6
B
233 236Right-handed 310
Helix 34
AD7
B
247 254Right-handed alpha
Helix 35
AD8
B
278 282Right-handed 310
Helix 36
AD9
B
287 305Right-handed alpha
Helix 37
AE1
B
305 328Right-handed alpha
Helix 38
AE2
B
351 362Right-handed alpha
Helix 39
AE3
B
373 380Right-handed alpha
Helix 40
AE4
B
395 413Right-handed alpha
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There are 10 sheets in PDB entry 6C9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
30 31anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
364 365parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
242 246anti-parallel
Strand 3
A
227 231anti-parallel
Strand 4
A
204 208parallel
Strand 5
A
173 179parallel
Strand 6
A
123 127parallel
Strand 7
A
148 152parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
272 274anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 333first strand
Strand 2
A
342 347anti-parallel
Strand 3
A
385 389anti-parallel
Strand 4
A
367 369anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
30 31anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
364 365parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
242 246anti-parallel
Strand 3
B
227 231anti-parallel
Strand 4
B
204 208parallel
Strand 5
B
173 179parallel
Strand 6
B
123 127parallel
Strand 7
B
148 152parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 267first strand
Strand 2
B
272 274anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 333first strand
Strand 2
B
342 347anti-parallel
Strand 3
B
385 389anti-parallel
Strand 4
B
367 369anti-parallel
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