Analysis of interatomic Contacts of Structural Units in PDB entry:
6C9U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C9U entry

There are 4 chains in PDB entry 6C9U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 202
A	SER 204	PRO 910
L	ASP 17	PHE 231
H	GLU 3	PRO 220

There are 47 helices in PDB entry 6C9U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	32	Right-handed alpha
Helix 2	AA2	A	43	47	Right-handed 310
Helix 3	AA3	A	49	60	Right-handed alpha
Helix 4	AA4	A	74	79	Right-handed alpha
Helix 5	AA5	A	111	118	Right-handed alpha
Helix 6	AA6	A	119	136	Right-handed alpha
Helix 7	AA7	A	139	144	Right-handed 310
Helix 8	AA8	A	171	178	Right-handed alpha
Helix 9	AA9	A	178	191	Right-handed alpha
Helix 10	AB1	A	201	203	Right-handed 310
Helix 11	AB2	A	204	219	Right-handed alpha
Helix 12	AB3	A	236	244	Right-handed alpha
Helix 13	AB4	A	278	285	Right-handed alpha
Helix 14	AB5	A	310	325	Right-handed alpha
Helix 15	AB6	A	328	332	Right-handed 310
Helix 16	AB7	A	344	356	Right-handed alpha
Helix 17	AB8	A	372	377	Right-handed alpha
Helix 18	AB9	A	379	381	Right-handed 310
Helix 19	AC1	A	382	398	Right-handed alpha
Helix 20	AC2	A	414	418	Right-handed 310
Helix 21	AC3	A	481	497	Right-handed alpha
Helix 22	AC4	A	502	513	Right-handed alpha
Helix 23	AC5	A	527	540	Right-handed alpha
Helix 24	AC6	A	575	582	Right-handed alpha
Helix 25	AC7	A	582	596	Right-handed alpha
Helix 26	AC8	A	597	600	Right-handed 310
Helix 27	AC9	A	603	609	Right-handed alpha
Helix 28	AD1	A	619	641	Right-handed alpha
Helix 29	AD2	A	653	662	Right-handed alpha
Helix 30	AD3	A	666	684	Right-handed alpha
Helix 31	AD4	A	697	705	Right-handed alpha
Helix 32	AD5	A	727	740	Right-handed alpha
Helix 33	AD6	A	756	761	Right-handed 310
Helix 34	AD7	A	762	771	Right-handed alpha
Helix 35	AD8	A	792	796	Right-handed 310
Helix 36	AD9	A	797	807	Right-handed alpha
Helix 37	AE1	A	810	821	Right-handed alpha
Helix 38	AE2	A	835	846	Right-handed alpha
Helix 39	AE3	A	864	878	Right-handed alpha
Helix 40	AE4	A	883	888	Right-handed 310
Helix 41	AE5	L	100	104	Right-handed 310
Helix 42	AE6	L	143	148	Right-handed alpha
Helix 43	AE7	L	205	210	Right-handed alpha
Helix 44	AE8	H	30	34	Right-handed 310
Helix 45	AE9	H	55	59	Right-handed 310
Helix 46	AF1	H	91	95	Right-handed 310
Helix 47	AF2	H	208	211	Right-handed 310

There are 17 sheets in PDB entry 6C9U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	199	first strand
Strand 2	A	148	154	parallel
Strand 3	A	224	231	parallel
Strand 4	A	269	277	anti-parallel
Strand 5	A	34	42	anti-parallel
Strand 6	A	290	299	anti-parallel
Strand 7	A	448	456	anti-parallel
Strand 8	A	437	443	anti-parallel
Strand 9	A	334	336	parallel
Strand 10	A	367	370	parallel
Strand 11	A	420	422	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	93	94	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	904	905	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	427	428	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	479	first strand
Strand 2	A	519	525	anti-parallel
Strand 3	A	548	552	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	789	790	first strand
Strand 2	A	781	784	anti-parallel
Strand 3	A	647	650	parallel
Strand 4	A	560	564	parallel
Strand 5	A	825	828	parallel
Strand 6	A	853	855	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	692	first strand
Strand 2	A	722	726	anti-parallel
Strand 3	A	715	716	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	21	22	first strand
Strand 2	L	35	41	anti-parallel
Strand 3	L	91	96	anti-parallel
Strand 4	L	83	88	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	26	29	first strand
Strand 2	L	124	128	parallel
Strand 3	L	105	111	anti-parallel
Strand 4	L	54	59	anti-parallel
Strand 5	L	65	70	anti-parallel
Strand 6	L	74	75	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	136	140	first strand
Strand 2	L	151	161	anti-parallel
Strand 3	L	195	204	anti-parallel
Strand 4	L	181	185	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	167	170	first strand
Strand 2	L	216	219	anti-parallel
Strand 3	L	227	229	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	9	first strand
Strand 2	H	20	27	anti-parallel
Strand 3	H	82	87	anti-parallel
Strand 4	H	72	77	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	114	118	parallel
Strand 3	H	96	102	anti-parallel
Strand 4	H	36	41	anti-parallel
Strand 5	H	47	53	anti-parallel
Strand 6	H	62	64	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	114	118	parallel
Strand 3	H	96	102	anti-parallel
Strand 4	H	109	110	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	144	152	anti-parallel
Strand 3	H	183	190	anti-parallel
Strand 4	H	171	172	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	144	152	anti-parallel
Strand 3	H	183	190	anti-parallel
Strand 4	H	176	177	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	202	207	anti-parallel
Strand 3	H	212	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C9U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C9U