Analysis of interatomic Contacts of Structural Units in PDB entry:
6C9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C9V entry

There are 2 chains in PDB entry 6C9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ALA 324
B
 THR 2ALA 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6C9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA2
A
21 24Right-handed alpha
Helix 2
AA4
A
49 59Right-handed alpha
Helix 3
AA5
A
72 84Right-handed 310
Helix 4
AA6
A
119 126Right-handed 310
Helix 5
AA7
A
129 136Right-handed alpha
Helix 6
AA8
A
149 162Right-handed alpha
Helix 7
AB1
A
171 176Right-handed 310
Helix 8
AB2
A
179 186Right-handed alpha
Helix 9
AB3
A
196 206Right-handed alpha
Helix 10
AB4
A
210 214Right-handed alpha
Helix 11
AB5
A
225 227Right-handed 310
Helix 12
AB6
A
255 269Right-handed alpha
Helix 13
AB7
A
273 288Right-handed alpha
Helix 14
AB8
A
300 311Right-handed alpha
Helix 15
AB9
A
313 323Right-handed alpha
Helix 16
AC2
B
21 24Right-handed alpha
Helix 17
AC4
B
49 59Right-handed alpha
Helix 18
AC5
B
72 84Right-handed 310
Helix 19
AC7
B
119 126Right-handed 310
Helix 20
AC8
B
129 136Right-handed alpha
Helix 21
AC9
B
149 162Right-handed alpha
Helix 22
AD1
B
171 176Right-handed 310
Helix 23
AD2
B
179 186Right-handed alpha
Helix 24
AD3
B
196 206Right-handed alpha
Helix 25
AD4
B
210 214Right-handed alpha
Helix 26
AD5
B
225 227Right-handed 310
Helix 27
AD6
B
255 269Right-handed alpha
Helix 28
AD7
B
273 288Right-handed alpha
Helix 29
AD8
B
300 311Right-handed alpha
Helix 30
AD9
B
313 323Right-handed alpha
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There are 8 sheets in PDB entry 6C9V. Click on sheet of interest to get list of strands forming it: A, B, C, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
3 6parallel
Strand 3
A
141 145parallel
Strand 4
A
166 169parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
10 16anti-parallel
Strand 3
A
100 106parallel
Strand 4
A
112 117parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 195first strand
Strand 2
A
219 223parallel
Strand 3
A
229 233anti-parallel
Strand 4
A
238 241anti-parallel
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There are 1 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 67first strand
Strand 2
B
3 6parallel
Strand 3
B
141 145parallel
Strand 4
B
166 169parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
10 16anti-parallel
Strand 3
B
100 106parallel
Strand 4
B
112 117anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 195first strand
Strand 2
B
219 223parallel
Strand 3
B
229 233anti-parallel
Strand 4
B
238 241anti-parallel
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There are 1 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
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