Analysis of interatomic Contacts of Structural Units in PDB entry:
6C9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C9W entry

There are 2 chains in PDB entry 6C9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 3LEU 408
B
 VAL 2HIS 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6C9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 24Right-handed alpha
Helix 2
AA2
A
29 36Right-handed alpha
Helix 3
AA3
A
44 70Right-handed alpha
Helix 4
AA4
A
74 85Right-handed alpha
Helix 5
AA5
A
86 94Right-handed alpha
Helix 6
AA6
A
94 101Right-handed alpha
Helix 7
AA7
A
102 118Right-handed alpha
Helix 8
AA8
A
120 136Right-handed alpha
Helix 9
AA9
A
139 163Right-handed alpha
Helix 10
AB1
A
167 187Right-handed alpha
Helix 11
AB2
A
209 215Right-handed alpha
Helix 12
AB3
A
219 233Right-handed alpha
Helix 13
AB4
A
233 242Right-handed alpha
Helix 14
AB5
A
242 249Right-handed alpha
Helix 15
AB6
A
253 287Right-handed alpha
Helix 16
AB7
A
288 309Right-handed alpha
Helix 17
AB8
A
311 321Right-handed alpha
Helix 18
AB9
A
321 341Right-handed alpha
Helix 19
AC1
A
342 344Right-handed 310
Helix 20
AC2
A
345 353Right-handed alpha
Helix 21
AC3
A
354 376Right-handed alpha
Helix 22
AC4
A
377 400Right-handed alpha
Helix 23
AC5
B
87 91Right-handed 310
Helix 24
AC6
B
108 110Right-handed 310
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There are 3 sheets in PDB entry 6C9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
20 23anti-parallel
Strand 3
B
78 82anti-parallel
Strand 4
B
69 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
119 124parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
119 124parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
112 115anti-parallel
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