Analysis of interatomic Contacts of Structural Units in PDB entry:
6CA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CA8 entry

There is 1 chain in PDB entry 6CA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 470GLU 1210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6CA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
489 492Right-handed 310
Helix 2
AA2
A
500 515Right-handed alpha
Helix 3
AA3
A
535 542Right-handed alpha
Helix 4
AA4
A
542 553Right-handed alpha
Helix 5
AA5
A
579 597Right-handed alpha
Helix 6
AA6
A
597 603Right-handed alpha
Helix 7
AA7
A
628 638Right-handed alpha
Helix 8
AA8
A
651 655Right-handed 310
Helix 9
AA9
A
656 666Right-handed alpha
Helix 10
AB1
A
667 669Right-handed 310
Helix 11
AB2
A
678 690Right-handed alpha
Helix 12
AB3
A
693 703Right-handed alpha
Helix 13
AB4
A
719 726Right-handed alpha
Helix 14
AB5
A
726 739Right-handed alpha
Helix 15
AB6
A
747 761Right-handed alpha
Helix 16
AB7
A
768 779Right-handed alpha
Helix 17
AB8
A
784 797Right-handed alpha
Helix 18
AB9
A
837 842Right-handed alpha
Helix 19
AC1
A
843 850Right-handed 310
Helix 20
AC2
A
870 876Right-handed alpha
Helix 21
AC3
A
892 905Right-handed alpha
Helix 22
AC4
A
955 968Right-handed alpha
Helix 23
AC5
A
969 972Right-handed 310
Helix 24
AC6
A
994 1005Right-handed alpha
Helix 25
AC7
A
1005 1010Right-handed alpha
Helix 26
AC8
A
1035 1081Right-handed alpha
Helix 27
AC9
A
1090 1101Right-handed alpha
Helix 28
AD1
A
1105 1110Right-handed alpha
Helix 29
AD2
A
1141 1143Right-handed 310
Helix 30
AD3
A
1144 1149Right-handed alpha
Helix 31
AD4
A
1151 1155Right-handed 310
Helix 32
AD5
A
1156 1180Right-handed alpha
Helix 33
AD6
A
1181 1209Right-handed alpha
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There are 8 sheets in PDB entry 6CA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 524first strand
Strand 2
A
494 499parallel
Strand 3
A
571 575parallel
Strand 4
A
607 610parallel
Strand 5
A
671 675anti-parallel
Strand 6
A
716 718parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
624 626first strand
Strand 2
A
615 618anti-parallel
Strand 3
A
645 648anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
766 767first strand
Strand 2
A
831 832anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
852 855first strand
Strand 2
A
858 862anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
877 880first strand
Strand 2
A
885 888anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
922 925first strand
Strand 2
A
930 934anti-parallel
Strand 3
A
1013 1017anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
936 939first strand
Strand 2
A
944 949anti-parallel
Strand 3
A
989 992anti-parallel
Strand 4
A
977 980anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1021 1024first strand
Strand 2
A
1030 1033anti-parallel
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