Analysis of interatomic Contacts of Structural Units in PDB entry:
6CAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CAF entry

There is 1 chain in PDB entry 6CAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1MET 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6CAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 5Right-handed 310
Helix 2
AA2
A
13 17Right-handed 310
Helix 3
AA3
A
18 25Right-handed alpha
Helix 4
AA4
A
61 64Right-handed 310
Helix 5
AA5
A
65 75Right-handed alpha
Helix 6
AA6
A
94 110Right-handed alpha
Helix 7
AA7
A
138 154Right-handed alpha
Helix 8
AA8
A
172 178Right-handed alpha
Helix 9
AA9
A
201 215Right-handed alpha
Helix 10
AB1
A
229 233Right-handed 310
Helix 11
AB2
A
240 248Right-handed alpha
Helix 12
AB3
A
249 252Right-handed 310
Helix 13
AB4
A
254 258Right-handed alpha
Helix 14
AB5
A
266 274Right-handed alpha
Helix 15
AB6
A
274 284Right-handed alpha
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There are 2 sheets in PDB entry 6CAF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
30 36parallel
Strand 3
A
78 84parallel
Strand 4
A
125 129parallel
Strand 5
A
158 161parallel
Strand 6
A
183 187parallel
Strand 7
A
222 227parallel
Strand 8
A
259 265parallel
Strand 9
A
6 11parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
89 90parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il