Analysis of interatomic Contacts of Structural Units in PDB entry:
6CB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CB0 entry

There are 2 chains in PDB entry 6CB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 31ASP 402
B
 GLU 34ASP 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6CB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 51Right-handed 310
Helix 2
AA2
A
63 75Right-handed alpha
Helix 3
AA3
A
79 81Right-handed 310
Helix 4
AA4
A
103 115Right-handed alpha
Helix 5
AA5
A
116 118Right-handed 310
Helix 6
AA6
A
132 139Right-handed alpha
Helix 7
AA7
A
140 159Right-handed alpha
Helix 8
AA8
A
164 180Right-handed alpha
Helix 9
AA9
A
186 189Right-handed 310
Helix 10
AB1
A
190 200Right-handed alpha
Helix 11
AB2
A
202 206Right-handed 310
Helix 12
AB3
A
208 214Right-handed alpha
Helix 13
AB4
A
216 230Right-handed alpha
Helix 14
AB5
A
235 248Right-handed alpha
Helix 15
AB6
A
249 251Right-handed 310
Helix 16
AB7
A
295 297Right-handed 310
Helix 17
AB8
A
333 353Right-handed alpha
Helix 18
AB9
B
48 51Right-handed 310
Helix 19
AC1
B
63 75Right-handed alpha
Helix 20
AC2
B
79 81Right-handed 310
Helix 21
AC3
B
103 112Right-handed alpha
Helix 22
AC4
B
116 118Right-handed 310
Helix 23
AC5
B
132 139Right-handed alpha
Helix 24
AC6
B
140 159Right-handed alpha
Helix 25
AC7
B
164 180Right-handed alpha
Helix 26
AC8
B
190 200Right-handed alpha
Helix 27
AC9
B
202 206Right-handed 310
Helix 28
AD1
B
208 215Right-handed alpha
Helix 29
AD2
B
216 232Right-handed alpha
Helix 30
AD3
B
235 248Right-handed alpha
Helix 31
AD4
B
249 251Right-handed 310
Helix 32
AD5
B
295 297Right-handed 310
Helix 33
AD6
B
333 352Right-handed alpha
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There are 4 sheets in PDB entry 6CB0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
83 89anti-parallel
Strand 3
A
120 126anti-parallel
Strand 4
A
36 40parallel
Strand 5
A
53 58anti-parallel
Strand 6
A
398 400anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 294first strand
Strand 2
A
279 282anti-parallel
Strand 3
A
268 275anti-parallel
Strand 4
A
256 262anti-parallel
Strand 5
A
327 331anti-parallel
Strand 6
A
314 320anti-parallel
Strand 7
A
299 306anti-parallel
Strand 8
A
367 368anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
83 89anti-parallel
Strand 3
B
120 126anti-parallel
Strand 4
B
35 40parallel
Strand 5
B
53 58anti-parallel
Strand 6
B
398 400anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 294first strand
Strand 2
B
279 282anti-parallel
Strand 3
B
268 275anti-parallel
Strand 4
B
256 262anti-parallel
Strand 5
B
327 330anti-parallel
Strand 6
B
315 320anti-parallel
Strand 7
B
299 306anti-parallel
Strand 8
B
370 371parallel
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