Analysis of interatomic Contacts of Structural Units in PDB entry:
6CBC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CBC entry

There are 2 chains in PDB entry 6CBC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6GLY 320
B
 LEU 2GLN 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6CBC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 18Right-handed alpha
Helix 2
AA2
A
136 150Right-handed alpha
Helix 3
AA3
A
228 238Right-handed alpha
Helix 4
AA4
A
290 296Right-handed alpha
Helix 5
AA5
A
296 315Right-handed alpha
Helix 6
AA6
B
3 18Right-handed alpha
Helix 7
AA7
B
22 26Right-handed 310
Helix 8
AA8
B
47 51Right-handed 310
Helix 9
AA9
B
134 150Right-handed alpha
Helix 10
AB1
B
232 240Right-handed alpha
Helix 11
AB2
B
290 296Right-handed alpha
Helix 12
AB3
B
296 310Right-handed alpha
Helix 13
AB4
B
311 314Right-handed 310
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There are 3 sheets in PDB entry 6CBC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
55 67anti-parallel
Strand 3
A
79 90anti-parallel
Strand 4
A
153 164parallel
Strand 5
A
173 179anti-parallel
Strand 6
A
201 216anti-parallel
Strand 7
A
252 266anti-parallel
Strand 8
A
276 282anti-parallel
Strand 9
B
285 289anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
55 67anti-parallel
Strand 3
A
79 90anti-parallel
Strand 4
A
153 164parallel
Strand 5
A
181 187anti-parallel
Strand 6
A
201 216anti-parallel
Strand 7
A
252 266anti-parallel
Strand 8
A
276 282anti-parallel
Strand 9
B
285 289anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 289first strand
Strand 2
B
276 282anti-parallel
Strand 3
B
252 266anti-parallel
Strand 4
B
201 217anti-parallel
Strand 5
B
173 187anti-parallel
Strand 6
B
152 164anti-parallel
Strand 7
B
79 91parallel
Strand 8
B
54 67anti-parallel
Strand 9
B
35 41anti-parallel
Strand 10
B
27 28anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il