Analysis of interatomic Contacts of Structural Units in PDB entry:
6CBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CBM entry

There are 2 chains in PDB entry 6CBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6LEU 414
B
 SER 6LEU 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6CBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 50Right-handed alpha
Helix 2
AA2
A
57 69Right-handed alpha
Helix 3
AA3
A
79 94Right-handed alpha
Helix 4
AA4
A
103 120Right-handed alpha
Helix 5
AA5
A
133 137Right-handed 310
Helix 6
AA6
A
156 164Right-handed alpha
Helix 7
AA7
A
165 168Right-handed 310
Helix 8
AA8
A
183 198Right-handed alpha
Helix 9
AA9
A
249 255Right-handed 310
Helix 10
AB1
A
262 278Right-handed alpha
Helix 11
AB2
A
279 303Right-handed alpha
Helix 12
AB3
A
322 336Right-handed alpha
Helix 13
AB4
A
353 371Right-handed alpha
Helix 14
AB5
A
372 375Right-handed 310
Helix 15
AB6
A
381 394Right-handed alpha
Helix 16
AB7
A
402 414Right-handed alpha
Helix 17
AB8
B
45 50Right-handed alpha
Helix 18
AB9
B
57 69Right-handed alpha
Helix 19
AC1
B
79 94Right-handed alpha
Helix 20
AC2
B
103 120Right-handed alpha
Helix 21
AC3
B
133 137Right-handed 310
Helix 22
AC4
B
156 164Right-handed alpha
Helix 23
AC5
B
165 168Right-handed 310
Helix 24
AC6
B
183 198Right-handed alpha
Helix 25
AC7
B
249 255Right-handed 310
Helix 26
AC8
B
262 278Right-handed alpha
Helix 27
AC9
B
279 303Right-handed alpha
Helix 28
AD1
B
322 336Right-handed alpha
Helix 29
AD2
B
353 371Right-handed alpha
Helix 30
AD3
B
372 375Right-handed 310
Helix 31
AD4
B
381 394Right-handed alpha
Helix 32
AD5
B
402 414Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6CBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
32 35anti-parallel
Strand 3
A
40 43anti-parallel
Strand 4
A
338 339parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 101first strand
Strand 2
A
240 244anti-parallel
Strand 3
A
226 229anti-parallel
Strand 4
A
200 205parallel
Strand 5
A
170 175parallel
Strand 6
A
123 127parallel
Strand 7
A
150 152parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 311first strand
Strand 2
A
316 320anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
32 35anti-parallel
Strand 3
B
40 43anti-parallel
Strand 4
B
338 339parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 101first strand
Strand 2
B
240 244anti-parallel
Strand 3
B
226 229anti-parallel
Strand 4
B
200 205parallel
Strand 5
B
170 175parallel
Strand 6
B
123 127parallel
Strand 7
B
150 152parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 311first strand
Strand 2
B
316 320anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il