Analysis of interatomic Contacts of Structural Units in PDB entry:
6CBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CBN entry

There are 2 chains in PDB entry 6CBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6LEU 414
B
 SER 6LEU 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6CBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 50Right-handed alpha
Helix 2
AA2
A
57 69Right-handed alpha
Helix 3
AA3
A
79 94Right-handed alpha
Helix 4
AA4
A
103 120Right-handed alpha
Helix 5
AA5
A
133 137Right-handed 310
Helix 6
AA6
A
156 164Right-handed alpha
Helix 7
AA7
A
165 168Right-handed 310
Helix 8
AA8
A
183 198Right-handed alpha
Helix 9
AA9
A
245 250Right-handed alpha
Helix 10
AB1
A
251 255Right-handed 310
Helix 11
AB2
A
262 278Right-handed alpha
Helix 12
AB3
A
279 303Right-handed alpha
Helix 13
AB4
A
322 336Right-handed alpha
Helix 14
AB5
A
353 371Right-handed alpha
Helix 15
AB6
A
372 375Right-handed 310
Helix 16
AB7
A
381 394Right-handed alpha
Helix 17
AB8
A
402 414Right-handed alpha
Helix 18
AB9
B
45 50Right-handed alpha
Helix 19
AC1
B
57 69Right-handed alpha
Helix 20
AC2
B
79 94Right-handed alpha
Helix 21
AC3
B
103 120Right-handed alpha
Helix 22
AC4
B
133 137Right-handed 310
Helix 23
AC5
B
156 164Right-handed alpha
Helix 24
AC6
B
165 168Right-handed 310
Helix 25
AC7
B
183 198Right-handed alpha
Helix 26
AC8
B
245 250Right-handed alpha
Helix 27
AC9
B
251 255Right-handed 310
Helix 28
AD1
B
262 278Right-handed alpha
Helix 29
AD2
B
279 303Right-handed alpha
Helix 30
AD3
B
322 337Right-handed alpha
Helix 31
AD4
B
353 371Right-handed alpha
Helix 32
AD5
B
372 375Right-handed 310
Helix 33
AD6
B
381 394Right-handed alpha
Helix 34
AD7
B
402 414Right-handed alpha
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There are 6 sheets in PDB entry 6CBN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
32 35anti-parallel
Strand 3
A
40 43anti-parallel
Strand 4
A
338 339parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 101first strand
Strand 2
A
240 244anti-parallel
Strand 3
A
226 229anti-parallel
Strand 4
A
200 205parallel
Strand 5
A
170 175parallel
Strand 6
A
123 127parallel
Strand 7
A
150 152parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 311first strand
Strand 2
A
316 320anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
32 35anti-parallel
Strand 3
B
40 43anti-parallel
Strand 4
B
338 339parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 101first strand
Strand 2
B
240 244anti-parallel
Strand 3
B
226 229anti-parallel
Strand 4
B
200 205parallel
Strand 5
B
170 175parallel
Strand 6
B
123 127parallel
Strand 7
B
150 152parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 311first strand
Strand 2
B
316 320anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il