Analysis of interatomic Contacts of Structural Units in PDB entry:
6CBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CBY entry

There are 2 chains in PDB entry 6CBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5SER 432
B
 GLY 5HIS 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 6CBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 48Right-handed 310
Helix 2
AA2
A
75 97Right-handed alpha
Helix 3
AA3
A
98 100Right-handed 310
Helix 4
AA4
A
103 119Right-handed alpha
Helix 5
AA5
A
130 134Right-handed 310
Helix 6
AA6
A
142 161Right-handed alpha
Helix 7
AA7
A
168 183Right-handed alpha
Helix 8
AA8
A
199 205Right-handed alpha
Helix 9
AA9
A
246 259Right-handed alpha
Helix 10
AB1
A
264 270Right-handed alpha
Helix 11
AB2
A
272 277Right-handed alpha
Helix 12
AB3
A
287 309Right-handed alpha
Helix 13
AB4
A
313 329Right-handed alpha
Helix 14
AB5
A
336 354Right-handed alpha
Helix 15
AB6
A
355 374Right-handed alpha
Helix 16
AB7
A
378 395Right-handed alpha
Helix 17
AB8
A
397 416Right-handed alpha
Helix 18
AB9
A
420 432Right-handed alpha
Helix 19
AC1
B
45 48Right-handed 310
Helix 20
AC2
B
75 97Right-handed alpha
Helix 21
AC3
B
98 100Right-handed 310
Helix 22
AC4
B
103 119Right-handed alpha
Helix 23
AC5
B
123 127Right-handed 310
Helix 24
AC6
B
137 141Right-handed 310
Helix 25
AC7
B
142 161Right-handed alpha
Helix 26
AC8
B
168 183Right-handed alpha
Helix 27
AC9
B
199 204Right-handed alpha
Helix 28
AD1
B
246 259Right-handed alpha
Helix 29
AD2
B
264 270Right-handed alpha
Helix 30
AD3
B
272 277Right-handed alpha
Helix 31
AD4
B
288 309Right-handed alpha
Helix 32
AD5
B
313 329Right-handed alpha
Helix 33
AD6
B
336 353Right-handed alpha
Helix 34
AD7
B
355 374Right-handed alpha
Helix 35
AD8
B
378 396Right-handed alpha
Helix 36
AD9
B
397 416Right-handed alpha
Helix 37
AE1
B
420 431Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6CBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 14first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
235 238anti-parallel
Strand 4
A
206 207parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
221 226anti-parallel
Strand 3
A
213 218anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
193 198anti-parallel
Strand 3
A
184 187anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
72 73anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 14first strand
Strand 2
B
18 23anti-parallel
Strand 3
B
235 238anti-parallel
Strand 4
B
206 207parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 37first strand
Strand 2
B
221 226anti-parallel
Strand 3
B
213 218anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
193 197anti-parallel
Strand 3
B
184 187anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 64first strand
Strand 2
B
72 73anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il