Analysis of interatomic Contacts of Structural Units in PDB entry:
6CCA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CCA entry

There is 1 chain in PDB entry 6CCA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ARG 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 6CCA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 20Right-handed alpha
Helix 2
AA2
A
22 31Right-handed alpha
Helix 3
AA3
A
32 54Right-handed alpha
Helix 4
AA4
A
66 74Right-handed alpha
Helix 5
AA5
A
76 78Right-handed 310
Helix 6
AA6
A
79 93Right-handed alpha
Helix 7
AA7
A
112 125Right-handed alpha
Helix 8
AA8
A
129 142Right-handed alpha
Helix 9
AA9
A
142 148Right-handed alpha
Helix 10
AB1
A
152 158Right-handed alpha
Helix 11
AB2
A
159 162Right-handed 310
Helix 12
AB3
A
166 171Right-handed alpha
Helix 13
AB4
A
173 195Right-handed alpha
Helix 14
AB5
A
196 198Right-handed 310
Helix 15
AB6
A
216 225Right-handed alpha
Helix 16
AB7
A
226 229Right-handed 310
Helix 17
AB8
A
239 251Right-handed alpha
Helix 18
AB9
A
292 303Right-handed alpha
Helix 19
AC1
A
319 325Right-handed alpha
Helix 20
AC2
A
326 334Right-handed 310
Helix 21
AC3
A
337 341Right-handed 310
Helix 22
AC4
A
349 360Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6CCA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
390 391anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
102 105anti-parallel
Strand 3
A
96 99anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 259first strand
Strand 2
A
231 235parallel
Strand 3
A
204 209parallel
Strand 4
A
278 284parallel
Strand 5
A
304 315parallel
Strand 6
A
380 387anti-parallel
Strand 7
A
362 367anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
375 376anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il