Analysis of interatomic Contacts of Structural Units in PDB entry:
6CCB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CCB entry

There are 8 chains in PDB entry 6CCB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 523	ASP 664
B	LEU 523	ASP 664
C	LEU 34	VAL 505
D	GLN 1	CYS 216
E	VAL 8	CYS 212
G	LEU 34	VAL 505
H	GLN 1	CYS 216
L	VAL 8	CYS 212

There are 46 helices in PDB entry 6CCB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	523	528	Right-handed 310
Helix 2	AA2	A	529	534	Right-handed alpha
Helix 3	AA3	A	536	543	Right-handed alpha
Helix 4	AA4	A	547	552	Right-handed alpha
Helix 5	AA5	A	569	596	Right-handed alpha
Helix 6	AA6	A	618	624	Right-handed alpha
Helix 7	AA7	A	627	636	Right-handed alpha
Helix 8	AA8	A	638	650	Right-handed alpha
Helix 9	AA9	A	652	663	Right-handed alpha
Helix 10	AB1	B	523	528	Right-handed 310
Helix 11	AB2	B	529	534	Right-handed alpha
Helix 12	AB3	B	536	543	Right-handed alpha
Helix 13	AB4	B	547	552	Right-handed alpha
Helix 14	AB5	B	569	596	Right-handed alpha
Helix 15	AB6	B	618	624	Right-handed alpha
Helix 16	AB7	B	627	636	Right-handed alpha
Helix 17	AB8	B	638	649	Right-handed alpha
Helix 18	AB9	B	650	663	Right-handed alpha
Helix 19	AC1	C	98	117	Right-handed alpha
Helix 20	AC2	C	195	198	Right-handed 310
Helix 21	AC3	C	335	350	Right-handed alpha
Helix 22	AC4	C	351	353	Right-handed 310
Helix 23	AC5	C	368	373	Right-handed alpha
Helix 24	AC6	C	425	429	Right-handed 310
Helix 25	AC7	C	475	481	Right-handed alpha
Helix 26	AC8	D	61	64	Right-handed 310
Helix 27	AC9	D	83	87	Right-handed 310
Helix 28	AD1	D	100	100	Right-handed 310
Helix 29	AD2	D	185	189	Right-handed 310
Helix 30	AD3	E	79	83	Right-handed 310
Helix 31	AD4	E	122	128	Right-handed alpha
Helix 32	AD5	E	182	189	Right-handed alpha
Helix 33	AD6	G	98	115	Right-handed alpha
Helix 34	AD7	G	195	198	Right-handed 310
Helix 35	AD8	G	335	350	Right-handed alpha
Helix 36	AD9	G	351	353	Right-handed 310
Helix 37	AE1	G	368	373	Right-handed alpha
Helix 38	AE2	G	387	390	Right-handed 310
Helix 39	AE3	G	425	429	Right-handed 310
Helix 40	AE4	G	475	481	Right-handed alpha
Helix 41	AE5	H	61	64	Right-handed 310
Helix 42	AE6	H	83	87	Right-handed 310
Helix 43	AE7	H	185	189	Right-handed 310
Helix 44	AE8	L	79	83	Right-handed 310
Helix 45	AE9	L	122	128	Right-handed alpha
Helix 46	AF1	L	182	189	Right-handed alpha

There are 41 sheets in PDB entry 6CCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	609	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	C	494	499	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	609	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	G	494	496	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	84	86	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	93	first strand
Strand 2	C	237	239	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	133	first strand
Strand 2	C	155	162	anti-parallel
Strand 3	C	169	176	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	191	193	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	449	456	anti-parallel
Strand 3	C	284	287	anti-parallel
Strand 4	C	271	273	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	449	456	anti-parallel
Strand 3	C	466	470	anti-parallel
Strand 4	C	359	361	parallel
Strand 5	C	393	395	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	378	first strand
Strand 2	C	381	385	anti-parallel
Strand 3	C	413	421	anti-parallel
Strand 4	C	329	334	anti-parallel
Strand 5	C	294	298	anti-parallel
Strand 6	C	443	447	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	301	first strand
Strand 2	C	323	324	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	308	first strand
Strand 2	C	316	320	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	423	424	first strand
Strand 2	C	434	435	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	100	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	100	anti-parallel
Strand 4	D	100	100	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	124	first strand
Strand 2	D	137	145	anti-parallel
Strand 3	D	176	183	anti-parallel
Strand 4	D	163	170	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	195	200	anti-parallel
Strand 3	D	205	210	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	89	anti-parallel
Strand 4	E	34	38	anti-parallel
Strand 5	E	45	48	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	21	first strand
Strand 2	E	73	75	anti-parallel
Strand 3	E	62	63	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	119	first strand
Strand 2	E	131	140	anti-parallel
Strand 3	E	173	181	anti-parallel
Strand 4	E	160	162	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	119	first strand
Strand 2	E	131	140	anti-parallel
Strand 3	E	173	181	anti-parallel
Strand 4	E	166	167	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	155	first strand
Strand 2	E	145	151	anti-parallel
Strand 3	E	192	198	anti-parallel
Strand 4	E	201	207	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	84	86	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	92	first strand
Strand 2	G	238	239	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	177	first strand
Strand 2	G	154	162	anti-parallel
Strand 3	G	129	133	anti-parallel
Strand 4	G	190	193	anti-parallel
Strand 5	G	181	183	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	443	456	anti-parallel
Strand 3	G	284	298	anti-parallel
Strand 4	G	271	273	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	443	456	anti-parallel
Strand 3	G	466	470	anti-parallel
Strand 4	G	359	361	parallel
Strand 5	G	393	395	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	300	301	first strand
Strand 2	G	323	324	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	308	first strand
Strand 2	G	316	320	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	329	334	first strand
Strand 2	G	413	421	anti-parallel
Strand 3	G	381	385	anti-parallel
Strand 4	G	374	378	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	423	424	first strand
Strand 2	G	434	435	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	100	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	100	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	124	first strand
Strand 2	H	137	142	anti-parallel
Strand 3	H	176	183	anti-parallel
Strand 4	H	163	170	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	195	200	anti-parallel
Strand 3	H	205	210	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	89	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	22	first strand
Strand 2	L	72	75	anti-parallel
Strand 3	L	62	63	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	160	162	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	166	167	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	155	first strand
Strand 2	L	145	151	anti-parallel
Strand 3	L	192	198	anti-parallel
Strand 4	L	201	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CCB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CCB