Analysis of interatomic Contacts of Structural Units in PDB entry:
6CCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CCF entry

There are 2 chains in PDB entry 6CCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 123LYS 411
B
 MET 123LYS 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6CCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
195 206Right-handed alpha
Helix 2
AA2
A
248 269Right-handed alpha
Helix 3
AA3
A
277 279Right-handed 310
Helix 4
AA4
A
313 317Right-handed 310
Helix 5
AA5
A
318 323Right-handed alpha
Helix 6
AA6
A
331 349Right-handed alpha
Helix 7
AA7
A
357 368Right-handed alpha
Helix 8
AA8
A
379 390Right-handed alpha
Helix 9
AA9
A
399 406Right-handed alpha
Helix 10
AB1
A
406 411Right-handed alpha
Helix 11
AB2
B
161 166Right-handed alpha
Helix 12
AB3
B
195 205Right-handed alpha
Helix 13
AB4
B
248 269Right-handed alpha
Helix 14
AB5
B
277 279Right-handed 310
Helix 15
AB6
B
313 317Right-handed 310
Helix 16
AB7
B
318 323Right-handed 310
Helix 17
AB8
B
331 349Right-handed alpha
Helix 18
AB9
B
357 368Right-handed alpha
Helix 19
AC1
B
379 390Right-handed alpha
Helix 20
AC2
B
399 406Right-handed alpha
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There are 8 sheets in PDB entry 6CCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
128 136anti-parallel
Strand 3
A
140 147anti-parallel
Strand 4
A
152 160anti-parallel
Strand 5
A
225 231anti-parallel
Strand 6
A
214 219anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
298 299anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
A
289 291anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 307first strand
Strand 2
A
329 330anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
128 136anti-parallel
Strand 3
B
140 147anti-parallel
Strand 4
B
152 160anti-parallel
Strand 5
B
225 231anti-parallel
Strand 6
B
214 219anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 272first strand
Strand 2
B
298 299anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 283first strand
Strand 2
B
289 291anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 307first strand
Strand 2
B
329 330anti-parallel
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