Analysis of interatomic Contacts of Structural Units in PDB entry:
6CCI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CCI entry

There is 1 chain in PDB entry 6CCI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 133ARG 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6CCI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
158 162Right-handed 310
Helix 2
AA2
A
179 182Right-handed 310
Helix 3
AA3
A
197 205Right-handed alpha
Helix 4
AA4
A
215 231Right-handed alpha
Helix 5
AA5
A
289 294Right-handed alpha
Helix 6
AA6
A
295 297Right-handed 310
Helix 7
AA7
A
307 311Right-handed 310
Helix 8
AA8
A
322 326Right-handed 310
Helix 9
AA9
A
335 354Right-handed alpha
Helix 10
AB1
A
372 377Right-handed 310
Helix 11
AB2
A
403 417Right-handed alpha
Helix 12
AB3
A
426 432Right-handed alpha
Helix 13
AB4
A
450 455Right-handed alpha
Helix 14
AB5
A
456 461Right-handed alpha
Helix 15
AB6
A
470 485Right-handed alpha
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There are 5 sheets in PDB entry 6CCI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 149first strand
Strand 2
A
184 188anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 243first strand
Strand 2
A
246 251anti-parallel
Strand 3
A
256 262anti-parallel
Strand 4
A
209 214parallel
Strand 5
A
301 304parallel
Strand 6
A
360 364parallel
Strand 7
A
421 424parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 284first strand
Strand 2
A
315 319parallel
Strand 3
A
330 334anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 439first strand
Strand 2
A
462 466anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 444first strand
Strand 2
A
447 448anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il