Analysis of interatomic Contacts of Structural Units in PDB entry:
6CCR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CCR entry

There is 1 chain in PDB entry 6CCR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 115ARG 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6CCR. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
150 152Right-handed 310
Helix 2
AA2
A
194 203Right-handed alpha
Helix 3
AA3
A
204 211Right-handed 310
Helix 4
AA4
A
221 228Right-handed alpha
Helix 5
AA5
A
250 255Right-handed 310
Helix 6
AA6
A
290 293Right-handed 310
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There is 1 sheet (AA1) in PDB entry 6CCR.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
127 134first strand
Strand 2
A
137 149anti-parallel
Strand 3
A
154 165anti-parallel
Strand 4
A
168 179anti-parallel
Strand 5
A
230 240anti-parallel
Strand 6
A
257 263anti-parallel
Strand 7
A
268 274anti-parallel
Strand 8
A
282 288anti-parallel
Strand 9
A
127 134anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il