Analysis of interatomic Contacts of Structural Units in PDB entry:
6CD0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CD0 entry

There are 5 chains in PDB entry 6CD0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 82	HIS 317
A	SER 319	VAL 533
B	PHE 82	HIS 317
B	SER 319	VAL 533
C	PHE 82	LEU 448

There are 94 helices in PDB entry 6CD0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	86	91	Right-handed alpha
Helix 2	AA2	A	91	108	Right-handed alpha
Helix 3	AA3	A	119	127	Right-handed alpha
Helix 4	AA4	A	128	133	Right-handed 310
Helix 5	AA5	A	147	165	Right-handed alpha
Helix 6	AA6	A	180	193	Right-handed alpha
Helix 7	AA7	A	203	207	Right-handed 310
Helix 8	AA8	A	209	213	Right-handed 310
Helix 9	AA9	A	222	228	Right-handed alpha
Helix 10	AB1	A	243	255	Right-handed alpha
Helix 11	AB2	A	271	282	Right-handed alpha
Helix 12	AB3	A	293	299	Right-handed alpha
Helix 13	AB4	A	304	308	Right-handed 310
Helix 14	AB5	A	317	321	Right-handed 310
Helix 15	AB6	A	339	349	Right-handed alpha
Helix 16	AB7	A	357	371	Right-handed alpha
Helix 17	AB8	A	373	397	Right-handed alpha
Helix 18	AB9	A	403	405	Right-handed 310
Helix 19	AC1	A	416	419	Right-handed 310
Helix 20	AC2	A	421	432	Right-handed alpha
Helix 21	AC3	A	457	463	Right-handed alpha
Helix 22	AC4	A	466	491	Right-handed alpha
Helix 23	AC5	A	495	505	Right-handed alpha
Helix 24	AC6	A	510	526	Right-handed alpha
Helix 25	AC7	B	86	91	Right-handed alpha
Helix 26	AC8	B	91	108	Right-handed alpha
Helix 27	AC9	B	119	127	Right-handed alpha
Helix 28	AD1	B	128	133	Right-handed 310
Helix 29	AD2	B	147	165	Right-handed alpha
Helix 30	AD3	B	180	193	Right-handed alpha
Helix 31	AD4	B	204	207	Right-handed 310
Helix 32	AD5	B	209	213	Right-handed 310
Helix 33	AD6	B	222	228	Right-handed alpha
Helix 34	AD7	B	243	255	Right-handed alpha
Helix 35	AD8	B	271	282	Right-handed alpha
Helix 36	AD9	B	293	299	Right-handed alpha
Helix 37	AE1	B	304	308	Right-handed 310
Helix 38	AE2	B	317	321	Right-handed 310
Helix 39	AE3	B	339	349	Right-handed alpha
Helix 40	AE4	B	357	371	Right-handed alpha
Helix 41	AE5	B	373	397	Right-handed alpha
Helix 42	AE6	B	403	405	Right-handed 310
Helix 43	AE7	B	416	419	Right-handed 310
Helix 44	AE8	B	421	432	Right-handed alpha
Helix 45	AE9	B	457	463	Right-handed alpha
Helix 46	AF1	B	466	491	Right-handed alpha
Helix 47	AF2	B	495	505	Right-handed alpha
Helix 48	AF3	B	510	526	Right-handed alpha
Helix 49	AF4	C	86	91	Right-handed alpha
Helix 50	AF5	C	91	108	Right-handed alpha
Helix 51	AF6	C	119	127	Right-handed alpha
Helix 52	AF7	C	128	133	Right-handed 310
Helix 53	AF8	C	147	165	Right-handed alpha
Helix 54	AF9	C	180	193	Right-handed alpha
Helix 55	AG1	C	204	207	Right-handed 310
Helix 56	AG2	C	209	213	Right-handed 310
Helix 57	AG3	C	222	228	Right-handed alpha
Helix 58	AG4	C	243	255	Right-handed alpha
Helix 59	AG5	C	271	282	Right-handed alpha
Helix 60	AG6	C	293	299	Right-handed alpha
Helix 61	AG7	C	304	308	Right-handed 310
Helix 62	AG8	C	339	349	Right-handed alpha
Helix 63	AG9	C	357	371	Right-handed alpha
Helix 64	AH1	C	373	397	Right-handed alpha
Helix 65	AH2	C	403	405	Right-handed 310
Helix 66	AH3	C	416	419	Right-handed 310
Helix 67	AH4	C	421	432	Right-handed alpha
Helix 68	AH5	C	457	464	Right-handed alpha
Helix 69	AH6	C	466	491	Right-handed alpha
Helix 70	AH7	C	495	505	Right-handed alpha
Helix 71	AH8	C	510	526	Right-handed alpha
Helix 72	AH9	D	86	91	Right-handed alpha
Helix 73	AI1	D	91	108	Right-handed alpha
Helix 74	AI2	D	119	127	Right-handed alpha
Helix 75	AI3	D	128	133	Right-handed 310
Helix 76	AI4	D	151	165	Right-handed alpha
Helix 77	AI5	D	180	193	Right-handed alpha
Helix 78	AI6	D	204	207	Right-handed 310
Helix 79	AI7	D	209	213	Right-handed 310
Helix 80	AI8	D	222	228	Right-handed alpha
Helix 81	AI9	D	243	255	Right-handed alpha
Helix 82	AJ1	D	271	282	Right-handed alpha
Helix 83	AJ2	D	293	299	Right-handed alpha
Helix 84	AJ3	D	304	308	Right-handed 310
Helix 85	AJ4	D	339	349	Right-handed alpha
Helix 86	AJ5	D	357	372	Right-handed alpha
Helix 87	AJ6	D	373	397	Right-handed alpha
Helix 88	AJ7	D	403	405	Right-handed 310
Helix 89	AJ8	D	416	419	Right-handed 310
Helix 90	AJ9	D	421	432	Right-handed alpha
Helix 91	AK1	D	457	464	Right-handed alpha
Helix 92	AK2	D	466	491	Right-handed alpha
Helix 93	AK3	D	495	505	Right-handed alpha
Helix 94	AK4	D	510	526	Right-handed alpha

There are 15 sheets in PDB entry 6CD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	434	435	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	A	141	142	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	175	first strand
Strand 2	A	326	331	anti-parallel
Strand 3	A	311	315	anti-parallel
Strand 4	A	285	289	parallel
Strand 5	A	258	261	parallel
Strand 6	A	198	200	parallel
Strand 7	A	229	230	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	410	414	anti-parallel
Strand 3	A	452	456	anti-parallel
Strand 4	A	437	439	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	434	435	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	138	first strand
Strand 2	B	141	142	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	175	first strand
Strand 2	B	326	331	anti-parallel
Strand 3	B	311	315	anti-parallel
Strand 4	B	285	289	parallel
Strand 5	B	258	261	parallel
Strand 6	B	198	202	parallel
Strand 7	B	229	233	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	401	first strand
Strand 2	B	410	414	anti-parallel
Strand 3	B	452	456	anti-parallel
Strand 4	B	437	439	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	110	first strand
Strand 2	C	434	435	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	141	142	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	175	first strand
Strand 2	C	326	331	anti-parallel
Strand 3	C	311	315	anti-parallel
Strand 4	C	285	289	parallel
Strand 5	C	258	261	parallel
Strand 6	C	198	202	parallel
Strand 7	C	229	233	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	401	first strand
Strand 2	C	410	414	anti-parallel
Strand 3	C	452	456	anti-parallel
Strand 4	C	437	439	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	110	first strand
Strand 2	D	434	435	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	175	first strand
Strand 2	D	326	331	anti-parallel
Strand 3	D	311	315	anti-parallel
Strand 4	D	285	289	parallel
Strand 5	D	258	261	parallel
Strand 6	D	198	202	parallel
Strand 7	D	229	233	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	401	first strand
Strand 2	D	410	414	anti-parallel
Strand 3	D	452	456	anti-parallel
Strand 4	D	437	439	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CD0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CD0